Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS21550	BPHYT_RS21555	BPHYT_RS21560	BPHYT_RS21565	BPHYT_RS21570
nitrogen source	Uridine (N)	N.D.	-2.7	-1.5	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.5	-0.9	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.7	-0.1	-1.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.1	-0.5	-0.8	-0.4
phage	24hr PHYTO3 MOI 10	N.D.	-0.4	-0.1	-1.2	-0.9
carbon source	m-Inositol (C)	N.D.	-0.2	-2.4	-0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.8	-0.2	-0.6	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.2	-1.0	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.1	-0.3	-0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.5	-0.6	-0.2	-0.7
phage	24hr PHYTO3 MOI 1	N.D.	-0.6	-0.2	-0.3	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	-0.0	-0.7	-0.6
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.6	-0.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	+0.0	-0.6	-0.7
carbon source	Suberic (C)	N.D.	-0.5	-0.3	-0.7	+0.1
phage	24hr PHYTO6 MOI 10	N.D.	-0.9	-0.5	-0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.9	+0.3	-0.1	-0.4
r2a control	R2A control	N.D.	-0.7	-0.3	+0.4	-0.1
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.5	-0.4	+0.4	-0.2
nitrogen source	L-Alanine (N)	N.D.	+0.5	-0.1	-0.6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.0	+0.6	-0.9	-0.1
phage	P. phyto corn MOI 1	N.D.	+0.6	-0.5	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.6	+0.7	-0.1	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	+0.5	+0.7	-0.7
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	-0.2	-0.4	+0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.2	+0.5	-0.5	+0.4
nitrogen source	L-Serine (N)	N.D.	+0.6	+0.6	+0.2	-0.3
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+1.1	+0.3	+0.3	-0.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+1.3	+0.0	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	+0.5	+0.7	-0.1