Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS21200	BPHYT_RS21205	BPHYT_RS21210	BPHYT_RS21215	BPHYT_RS21220
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.6	-0.3	-0.2	-1.4	-0.3
supernatant control	Vogels_fungal_media 0.1X	-0.3	+0.1	-0.1	-1.7	-0.0
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.0	+0.4	+0.1	-0.9	-1.0
phage	P. phyto PHYTO2 MOI 0.1	+0.4	-0.0	-0.1	-1.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.2	-0.5	-0.8	+0.5
phage	24hr PHYTO6 MOI 10	-1.0	+0.7	-0.9	+0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.3	-0.1	+1.0	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.8	-0.3	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.2	+0.0	+1.1	-0.7
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.6	-0.4	+0.2	+1.6	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	-0.7	+1.4	-0.3
phage	36hr PHYTO4 MOI 1	-0.0	+0.4	-0.7	+1.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	-0.1	-0.5	+0.0	+0.7
carbon source	D-Glucose (C)	+0.7	+0.8	+0.2	-0.6	+0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.5	-0.5	+0.3	+0.6
tn7 efficiency	Outgrowth after Tn7 transformation	+0.4	-0.2	-0.3	+1.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.4	-0.2	+1.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	-0.4	-0.2	+1.5	+0.3
phage	36hr PHYTO3 MOI 1	+0.5	+0.2	-0.4	+0.9	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.3	-0.4	+2.2	-0.0
carbon source	Protocatechuic Acid (C)	+0.3	+0.9	+0.2	-0.4	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.2	-0.2	-0.1	+1.1	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.0	-0.3	-0.6	+2.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.9	+0.1	-0.4	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.1	-0.1	+2.3	-0.3
carbon source	D-Glucose (C)	+0.4	+0.2	+0.0	+1.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.1	-0.1	+1.8	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.3	-0.5	+1.7	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.1	+0.2	+0.2	+1.2	+0.8
carbon source	D-Fructose (C)	+0.2	+0.2	+0.3	+1.6	+0.3