Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS21120 and BPHYT_RS21125 are separated by 173 nucleotidesBPHYT_RS21125 and BPHYT_RS21130 overlap by 4 nucleotidesBPHYT_RS21130 and BPHYT_RS21135 overlap by 4 nucleotidesBPHYT_RS21135 and BPHYT_RS21140 are separated by 32 nucleotides BPHYT_RS21120: BPHYT_RS21120 - hypothetical protein, at 300,132 to 300,959 _RS21120 BPHYT_RS21125: BPHYT_RS21125 - hypothetical protein, at 301,133 to 301,774 _RS21125 BPHYT_RS21130: BPHYT_RS21130 - F420-dependent oxidoreductase, at 301,771 to 302,550 _RS21130 BPHYT_RS21135: BPHYT_RS21135 - NADH-ubiquinone oxidoreductase subunit 6, at 302,547 to 303,227 _RS21135 BPHYT_RS21140: BPHYT_RS21140 - methylenetetrahydromethanopterin reductase, at 303,260 to 304,261 _RS21140
Group Condition BPHYT_RS21120 BPHYT_RS21125 BPHYT_RS21130 BPHYT_RS21135 BPHYT_RS21140
carbon source Phenylacetic 5 mM (C) -0.3 N.D. -3.0 -0.2 N.D.
phage 24hr PHYTO3 MOI 10 -0.0 N.D. -1.6 -0.5 N.D.
phage 24hr PHYTO10 MOI 10 -0.4 N.D. -1.1 -0.6 N.D.
phage 36hr PHYTO11 MOI 1 -0.1 N.D. -1.1 -0.8 N.D.
phage 24hr PHYTO11 MOI 1 -0.5 N.D. -1.0 -0.3 N.D.
phage 36hr PHYTO7 MOI 0.1 -0.8 N.D. -0.4 -0.6 N.D.
phage P. phyto PHYTO2 MOI 0.1 -0.0 N.D. -1.0 -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. -1.4 -0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.5 N.D. -0.7 -0.4 N.D.
phage 36hr PHYTO10 MOI 10 -0.3 N.D. -0.7 -0.5 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -1.2 -0.1 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.5 N.D. -1.0 -0.0 N.D.
nophagecontrol 24hr Phyto Lib Only +0.0 N.D. -1.2 -0.3 N.D.
lb LB +0.1 N.D. -1.4 -0.1 N.D.
motility inner cut, LB soft agar motility assay +0.3 N.D. -1.7 +0.2 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -0.5 -0.9 N.D.
carbon source L-Tryptophan (C) +0.4 N.D. -1.3 -0.2 N.D.
nitrogen source L-Serine (N) -0.3 N.D. -1.0 +0.2 N.D.
phage 36hr PHYTO4 MOI 1 -0.2 N.D. +0.8 -1.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.3 N.D. -0.6 +0.7 N.D.
carbon source D-Xylose (C) -0.7 N.D. +0.8 -0.1 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 N.D. +1.1 +0.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 N.D. +1.1 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. +0.5 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.7 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. +0.7 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. +0.6 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. +0.9 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. +0.5 +0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +1.1 +1.0 N.D.
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