Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS21090	BPHYT_RS21095	BPHYT_RS21100	BPHYT_RS21105	BPHYT_RS21110
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	-0.6	N.D.	-0.1	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.3	N.D.	-0.3	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.3	N.D.	-0.2	-0.9
phage	36hr PHYTO2 MOI 1	-0.1	-1.1	N.D.	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.1	N.D.	-0.6	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-0.1	N.D.	+0.1	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.0	N.D.	-0.5	-1.0
phage	36hr PHYTO3 MOI 1	+0.0	-0.8	N.D.	+0.2	-0.6
phage	24hr PHYTO7 MOI 1	+0.1	-0.8	N.D.	+0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.2	N.D.	-0.2	-0.8
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.8	+0.1	N.D.	-0.7	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.1	N.D.	-0.1	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.3	N.D.	+0.7	-0.4
phage	24hr PHYTO1 MOI 10	+0.1	-0.9	N.D.	+0.7	-0.4
phage	24hr PHYTO10 MOI 10	+0.8	-0.8	N.D.	-0.0	-0.3
phage	36hr PHYTO2 MOI 1	+0.4	-0.5	N.D.	+0.5	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7	+0.2	N.D.	-0.2	-0.9
nophagecontrol	36hr Phyto Lib Only	+0.2	-0.6	N.D.	+0.6	-0.3
nitrogen source	L-Glutamine (N)	+0.5	-0.2	N.D.	+0.5	-0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.3	N.D.	-0.0	-0.7
phage	36hr PHYTO6 MOI 10	+0.3	+0.3	N.D.	+0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	+0.1	N.D.	-0.0	+1.0
phage	PHYTO3 MOI 0.1	+0.6	-0.6	N.D.	+0.1	+0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	+0.8	N.D.	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.4	N.D.	-0.4	+1.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.4	-0.2	N.D.	+0.4	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+1.1	N.D.	-0.4	+0.3
supernatant control	Vogels_fungal_media 0.1X	+0.3	+0.4	N.D.	-0.4	+0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.2	+0.1	N.D.	-0.4	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.0	N.D.	+0.6	+0.9