Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS21050 and BPHYT_RS21055 are separated by 2 nucleotidesBPHYT_RS21055 and BPHYT_RS21060 are separated by 202 nucleotidesBPHYT_RS21060 and BPHYT_RS21065 are separated by 1304 nucleotidesBPHYT_RS21065 and BPHYT_RS21070 are separated by 45 nucleotides BPHYT_RS21050: BPHYT_RS21050 - aldehyde-activating protein, at 283,325 to 283,900 _RS21050 BPHYT_RS21055: BPHYT_RS21055 - S-formylglutathione hydrolase, at 283,903 to 284,733 _RS21055 BPHYT_RS21060: BPHYT_RS21060 - hypothetical protein, at 284,936 to 286,408 _RS21060 BPHYT_RS21065: BPHYT_RS21065 - glyoxalase, at 287,713 to 288,102 _RS21065 BPHYT_RS21070: BPHYT_RS21070 - ferredoxin, at 288,148 to 289,092 _RS21070
Group Condition BPHYT_RS21050 BPHYT_RS21055 BPHYT_RS21060 BPHYT_RS21065 BPHYT_RS21070
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -0.3 -1.1 N.D. -1.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -1.2 -0.9 N.D. -0.5
phage 36hr PHYTO3 MOI 1 -0.0 -1.4 -0.4 N.D. -0.4
phage 24hr PHYTO2 MOI 0.1 -0.2 -2.3 +0.0 N.D. +0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.2 -1.1 -0.1 N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.2 -1.3 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 +0.2 -0.6 N.D. -0.2
phage 36hr PHYTO8 MOI 10 -0.1 -0.5 +0.2 N.D. -1.4
phage 36hr PHYTO4 MOI 0.1 -0.4 -0.3 +0.2 N.D. -1.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.1 +0.9 -0.9 N.D. -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 -0.0 +0.4 N.D. -1.5
phage P. phyto PHYTO2 MOI 1 +0.2 -0.9 +0.6 N.D. -1.4
nophagecontrol 36hr Phyto Lib only -0.3 +0.4 -0.4 N.D. -1.1
nitrogen source L-Asparagine (N) -0.1 +0.4 -1.1 N.D. -0.5
phage 24hr PHYTO6 MOI 0.1 -0.2 +0.0 +0.6 N.D. -1.3
carbon source L-Fucose (C) +0.2 -1.5 +0.4 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.7 +0.4 N.D. -0.7
phage 36hr PHYTO11 MOI 0.1 -0.5 +0.6 +0.4 N.D. -1.2
phage 24hr PHYTO9 MOI 10 +0.4 +0.5 -0.5 N.D. -1.0
phage 36hr PHYTO2 MOI 1 -0.2 +0.6 +0.7 N.D. -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.2 +0.8 N.D. -1.1
phage 36hr PHYTO3 MOI 1 +0.3 +0.4 +0.4 N.D. -1.2
phage 36hr PHYTO8 MOI 10 -0.9 +0.5 +0.7 N.D. -0.3
phage 24hr PHYTO8 MOI 1 +0.0 +1.2 -0.0 N.D. -1.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.8 +0.4 N.D. -0.9
supernatant control Vogels_fungal_media 0.1X -0.8 +0.4 -0.1 N.D. +1.0
phage PHYTO3 MOI 0.1 +0.4 +1.3 -0.6 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +0.4 -0.1 N.D. +0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 +1.1 +0.2 N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.5 +0.6 -0.1 N.D. +1.2
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