Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS21040 and BPHYT_RS21045 are separated by 178 nucleotidesBPHYT_RS21045 and BPHYT_RS21050 are separated by 523 nucleotidesBPHYT_RS21050 and BPHYT_RS21055 are separated by 2 nucleotidesBPHYT_RS21055 and BPHYT_RS21060 are separated by 202 nucleotides BPHYT_RS21040: BPHYT_RS21040 - ABC transporter permease, at 280,614 to 281,540 _RS21040 BPHYT_RS21045: BPHYT_RS21045 - bis(5'-nucleosyl)-tetraphosphatase, at 281,719 to 282,801 _RS21045 BPHYT_RS21050: BPHYT_RS21050 - aldehyde-activating protein, at 283,325 to 283,900 _RS21050 BPHYT_RS21055: BPHYT_RS21055 - S-formylglutathione hydrolase, at 283,903 to 284,733 _RS21055 BPHYT_RS21060: BPHYT_RS21060 - hypothetical protein, at 284,936 to 286,408 _RS21060
Group Condition BPHYT_RS21040 BPHYT_RS21045 BPHYT_RS21050 BPHYT_RS21055 BPHYT_RS21060
phage 24hr PHYTO2 MOI 0.1 N.D. -0.9 -0.2 -2.3 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 -0.6 -0.2 -1.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.2 -0.1 -1.2 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 -0.7 -0.3 -0.7
phage 36hr PHYTO3 MOI 1 N.D. -0.1 -0.0 -1.4 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.0 -0.5 -0.3 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.0 -1.2 +0.2 -0.6
nophagecontrol 24hr Phyto Lib Only N.D. -2.0 +0.1 +0.2 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.5 -1.1 +0.9 -0.9
phage 36hr PHYTO8 MOI 10 N.D. -1.2 -0.1 -0.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.4 +0.1 +0.2 -0.5
carbon source D-Glucose (C) N.D. -0.6 -0.4 +0.2 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -1.1 +0.3 +0.5 -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.9 +0.6 -0.4 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.4 -0.5 +0.1 -0.8
phage 24hr PHYTO6 MOI 1 N.D. -0.8 -0.2 -0.3 +0.6
carbon source L-Fucose (C) N.D. +0.2 +0.2 -1.5 +0.4
phage 36hr PHYTO2 MOI 1 N.D. -1.5 -0.2 +0.6 +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.7 +0.1 -0.7 -0.4
phage 36hr PHYTO8 MOI 10 N.D. -0.5 -0.9 +0.5 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.8 -0.1 +0.4 +0.5
phage 24hr PHYTO8 MOI 1 N.D. -1.0 +0.0 +1.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.9 -0.1 -0.9 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.4 -0.2 -0.2 -0.2
carbon source Tween 20 (C) N.D. +0.4 +0.4 +0.7 -0.5
phage 36hr PHYTO6 MOI 1 N.D. +0.8 -0.3 +0.7 -0.1
phage 36hr PHYTO7 MOI 1 N.D. +0.9 +0.0 +0.8 -0.6
phage PHYTO3 MOI 0.1 N.D. +0.1 +0.4 +1.3 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 +1.0 +0.4 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.2 +0.4 +1.1 +0.2
remove
BPHYT_RS21040
plot		 remove
BPHYT_RS21045
plot		 remove
BPHYT_RS21050		 remove
BPHYT_RS21055
plot		 remove
BPHYT_RS21060
plot