Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS21005	BPHYT_RS21010	BPHYT_RS21015	BPHYT_RS21020	BPHYT_RS21025
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.9	N.D.	N.D.	+0.1	-4.7
phage	24hr PHYTO6 MOI 10	-0.2	N.D.	N.D.	-0.5	-2.5
phage	36hr PHYTO11 MOI 0.1	-0.2	N.D.	N.D.	-0.4	-2.4
phage	P. phyto PHYTO2 MOI 0.1	-0.0	N.D.	N.D.	-0.2	-2.4
nophagecontrol	36hr Phyto Lib only	-0.0	N.D.	N.D.	-0.4	-2.3
phage	24hr PHYTO3 MOI 1	-0.5	N.D.	N.D.	-0.1	-1.7
phage	36hr PHYTO6 MOI 10	-0.4	N.D.	N.D.	+0.5	-2.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	N.D.	N.D.	+0.2	-2.0
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.3	N.D.	N.D.	-0.0	-1.8
nitrogen source	NAG (N)	+0.3	N.D.	N.D.	+0.2	-2.0
phage	36hr PHYTO9 MOI 1	-0.0	N.D.	N.D.	+0.4	-1.6
nitrogen source	L-Citrulline (N)	-0.3	N.D.	N.D.	+0.4	-1.3
supernatant control	Vogels_fungal_media 0.1X	+1.0	N.D.	N.D.	-0.1	-2.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	N.D.	N.D.	+0.5	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	N.D.	N.D.	+0.9	-1.2
r2a control	R2A control	-0.8	N.D.	N.D.	-0.7	+0.9
carbon source	Tween 20 (C)	+0.7	N.D.	N.D.	+0.3	-1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	N.D.	N.D.	+0.9	-1.1
nitrogen source	Putrescine (N)	+0.4	N.D.	N.D.	+0.4	-1.2
supernatant control	Vogels_fungal_media 0.1X	+0.4	N.D.	N.D.	+0.5	-1.3
phage	36hr PHYTO10 MOI 10	-0.4	N.D.	N.D.	-0.2	+1.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.5	N.D.	N.D.	-0.2	+1.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	N.D.	N.D.	-0.5	+1.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.7	N.D.	N.D.	+0.4	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	N.D.	N.D.	-0.2	+1.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.6	N.D.	N.D.	+0.3	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	N.D.	N.D.	+0.4	+1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	N.D.	N.D.	+0.7	+2.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+2.1	N.D.	N.D.	+0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	N.D.	N.D.	+0.3	+4.6