Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20890	BPHYT_RS20895	BPHYT_RS20900	BPHYT_RS20905	BPHYT_RS20910
nitrogen source	L-Isoleucine (N)	-0.5	-0.2	-0.1	-2.8	-0.5
phage	36hr PHYTO2 MOI 1	-0.5	-0.3	-1.1	-0.7	-0.5
phage	24hr PHYTO7 MOI 10	-0.0	-0.4	-0.6	-1.6	-0.3
carbon source	Tween 20 (C)	-0.2	+0.1	-1.6	-1.2	+0.0
phage	36hr PHYTO1 MOI 1	+0.4	+0.1	-1.9	-1.1	-0.4
phage	36hr PHYTO2 MOI 1	-0.7	+0.1	-0.1	-1.6	-0.3
phage	24hr PHYTO6 MOI 0.1	+0.5	-0.2	-1.5	-1.2	-0.2
phage	P. phyto PHYTO2 MOI 1	+0.3	-0.3	+1.2	-3.2	-0.3
phage	24hr PHYTO3 MOI 1	+0.3	-0.2	+0.3	-2.4	-0.1
motility	outer cut, LB soft agar motility assay	+0.5	+0.6	-1.1	-1.0	-0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.7	-0.2	-2.0	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.3	-2.4	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.0	-1.9	+1.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.6	-1.3	-0.5	+0.2
phage	P. phyto PHYTO2 MOI 1	-0.0	-0.4	+1.0	-1.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+0.3	+1.4	-2.2	-0.0
carbon source	Protocatechuic Acid (C)	+0.9	-0.0	-2.2	+0.7	+0.0
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.3	+0.3	-1.8	+1.5	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.4	-1.5	+1.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.1	-1.7	+1.6	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.0	+0.5	-2.1	+1.2	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.6	+1.0	-0.6	-0.1	-0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	+0.4	-1.3	+1.5	+0.0
phage	36hr PHYTO9 MOI 1	-0.2	+0.4	-1.0	+1.2	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.9	-0.1	+1.0	-0.8	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.8	+0.4	+0.3	+1.3	+0.1
carbon source	adipate (C)	+1.1	-0.4	-0.3	+1.3	-0.1
supernatant control	Vogels_fungal_media 0.1X	-0.4	-0.1	+0.7	+1.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.2	-0.6	+3.9	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.0	+0.3	+0.9	+1.5	+0.5