Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS20880	BPHYT_RS20885	BPHYT_RS20890	BPHYT_RS20895	BPHYT_RS20900
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-4.2	+0.7	-0.1	-0.1	-2.0
nitrogen source	L-Lysine (N)	-4.3	-0.9	-0.5	-0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.2	+0.1	-0.5	-0.0	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-1.0	-0.4	-0.1	-1.7
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-4.4	-0.2	-0.1	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.9	-0.4	-0.5	-0.4	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-1.0	-0.1	+0.3	-2.4
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-2.3	-0.1	-0.1	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.8	-1.1	+0.1	+0.4	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-0.5	-0.2	+0.4	-1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	+0.1	-0.5	+0.3	-0.9
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	-2.2	+0.0	-0.3	-0.1	+0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.5	+0.2	-0.3	+0.3	-1.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.9	+0.6	+0.0	+0.5	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.5	+1.3	-1.2	+0.1	+0.4
phage	24hr PHYTO3 MOI 10	-0.9	-0.3	-0.5	-0.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.6	-0.9	+0.6	-0.0	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-1.1	-0.9	-0.2	+0.2	+0.8
phage	36hr PHYTO1 MOI 1	+0.4	-0.1	+0.4	+0.1	-1.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.9	-0.7	-0.3	+0.2	+0.7
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.5	+0.4	-1.3	+0.2	-0.4
carbon source	Protocatechuic Acid (C)	+1.4	-0.1	+0.9	-0.0	-2.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.7	+0.1	+0.6	+1.0	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.8	-0.2	+0.3	+1.4
motility	outer cut, LB soft agar motility assay	-1.6	+0.2	+1.2	+0.2	+0.5
phage	36hr PHYTO4 MOI 1	-0.8	+1.2	+0.8	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5	+0.5	+0.1	-0.2	-0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.9	+0.9	-0.1	+1.0
carbon source	adipate (C)	+1.6	+0.1	+1.1	-0.4	-0.3
phage	P. phyto PHYTO2 MOI 1	+1.3	+0.6	-0.0	-0.4	+1.0