Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS20845	BPHYT_RS20850	BPHYT_RS20855	BPHYT_RS20860	BPHYT_RS20865
phage	P. phyto PHYTO2 MOI 1	-3.4	-0.5	+0.2	N.D.	-1.1
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-1.4	-0.1	-0.4	N.D.	-1.4
nophagecontrol	24hr Phyto Lib only	-0.1	+0.1	+0.1	N.D.	-3.1
nitrogen source	L-Glutamic (N)	-2.0	+0.2	+0.0	N.D.	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0	-0.4	-0.1	N.D.	-1.1
phage	36hr PHYTO6 MOI 1	-1.4	-0.2	+0.3	N.D.	-1.0
phage	24hr PHYTO9 MOI 10	-1.0	+0.6	-0.1	N.D.	-1.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-1.5	-0.2	-0.3	N.D.	+0.3
phage	36hr PHYTO3 MOI 1	+0.4	-1.6	+0.2	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.9	+0.6	+0.2	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.3	+0.8	-0.4	N.D.	+0.4
temperature	LB, 37C	+0.7	+0.1	-0.1	N.D.	-2.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.4	+0.4	N.D.	-1.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	+0.3	+0.5	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.2	+0.5	+0.7	N.D.	+0.2
carbon source	Phenylacetic 5 mM (C)	-1.1	-0.2	-0.2	N.D.	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.9	-0.3	N.D.	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+1.0	-0.8	-0.2	N.D.	-0.6
phage	36hr PHYTO1 MOI 1	+1.1	-0.3	+0.1	N.D.	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+1.3	-0.3	N.D.	-0.4
nitrogen source	L-Lysine (N)	+1.1	+0.6	-0.5	N.D.	-0.9
phage	36hr PHYTO1 MOI 10	-1.0	+0.9	+0.2	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.5	+0.6	N.D.	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+1.3	-0.5	N.D.	-0.2
phage	36hr PHYTO8 MOI 10	+1.3	+0.3	+0.2	N.D.	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	+1.0	+0.3	N.D.	-0.7
carbon source	D-Glucose 20 mM (C)	+0.9	+0.5	-0.4	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.3	+0.0	N.D.	+1.9
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+1.6	+0.1	N.D.	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.4	+0.7	-0.0	N.D.	-0.1