Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS20835	BPHYT_RS20840	BPHYT_RS20845	BPHYT_RS20850	BPHYT_RS20855
phage	P. phyto PHYTO2 MOI 1	-0.2	-0.3	-3.4	-0.5	+0.2
carbon source	D-Glucose (C)	-1.1	-2.9	-0.1	+0.0	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.5	-2.1	-1.3	+0.8	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.9	-1.6	-0.2	+0.3	-0.2
phage	36hr PHYTO3 MOI 1	-0.0	-1.1	+0.4	-1.6	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-1.8	-0.4	-0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.9	-0.2	-0.5	+0.5
phage	24hr PHYTO9 MOI 10	+0.0	-1.2	-1.0	+0.6	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.2	-1.4	+1.0	-0.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.5	-2.3	+0.8	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.6	-1.1	-1.0	+0.3	-0.2
nitrogen source	L-Alanine (N)	-1.1	+0.6	-1.2	+0.6	-0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.1	-1.2	+0.3	+0.5
phage	24hr PHYTO11 MOI 0.1	+0.7	-0.6	-1.3	+0.3	+0.1
carbon source	D-Glucose (C)	-1.7	+0.3	+0.7	+0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.3	-2.2	+0.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.3	-1.9	+0.6	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	-2.2	+0.6	+1.0	+0.1	+0.2
phage	36hr PHYTO4 MOI 1	+0.5	-1.0	+0.9	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.7	-0.8	+0.9	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.1	+1.0	-0.3	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.9	+1.7	-0.4	-0.1	+0.1
phage	36hr PHYTO1 MOI 10	+0.3	+0.6	-1.0	+0.9	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.3	+1.2	+1.0	-0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+1.5	-0.4	-0.4	+0.7	+0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.8	+1.1	-0.1	+1.0	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+2.1	-0.3	+1.1	-0.0
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+1.5	+0.5	+1.6	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.1	+1.8	+0.4	+0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+1.1	+2.4	+0.7	-0.0