Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS20800 and BPHYT_RS20805 are separated by 126 nucleotidesBPHYT_RS20805 and BPHYT_RS20810 are separated by 59 nucleotidesBPHYT_RS20810 and BPHYT_RS20815 are separated by 18 nucleotidesBPHYT_RS20815 and BPHYT_RS20820 are separated by 7 nucleotides BPHYT_RS20800: BPHYT_RS20800 - alanine-phosphoribitol ligase, at 228,645 to 230,318 _RS20800 BPHYT_RS20805: BPHYT_RS20805 - LacI family transcriptional regulator, at 230,445 to 231,524 _RS20805 BPHYT_RS20810: BPHYT_RS20810 - ABC transporter permease, at 231,584 to 232,549 _RS20810 BPHYT_RS20815: BPHYT_RS20815 - ABC transporter ATP-binding protein, at 232,568 to 234,067 _RS20815 BPHYT_RS20820: BPHYT_RS20820 - ABC transporter permease, at 234,075 to 235,034 _RS20820
Group Condition BPHYT_RS20800 BPHYT_RS20805 BPHYT_RS20810 BPHYT_RS20815 BPHYT_RS20820
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.5 -0.9 -0.3 N.D.
phage 24hr PHYTO9 MOI 10 -0.4 -0.2 -0.8 -0.2 N.D.
carbon source D-Glucose 20 mM (C) -0.0 -1.4 -0.1 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.8 -0.5 -0.2 N.D.
phage 24hr PHYTO7 MOI 1 +0.1 -0.6 -1.0 +0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.7 -0.3 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.2 -0.5 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -0.5 -0.2 -0.4 N.D.
phage 36hr PHYTO8 MOI 10 +0.2 -0.7 -0.6 +0.4 N.D.
phage 36hr PHYTO6 MOI 0.1 +0.5 -0.1 -0.6 -0.5 N.D.
phage 36hr PHYTO2 MOI 1 +0.3 +0.0 -0.8 -0.3 N.D.
nitrogen source L-Serine (N) -0.4 +0.5 -0.8 +0.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.5 +0.3 -0.6 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.6 -0.3 +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.4 +0.2 -0.5 +0.4 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.5 -0.3 -0.5 +0.1 N.D.
supernatant control Vogels_fungal_media 0.1X -0.8 +0.6 +0.1 -0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.5 -0.7 -0.1 N.D.
phage P. phyto corn MOI 1 +0.4 -0.6 -0.4 +0.7 N.D.
phage 24hr PHYTO3 MOI 10 +0.2 +0.3 +0.3 -0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.3 +0.6 -0.4 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.9 -0.4 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.7 +0.3 +0.2 N.D.
phage PHYTO3 MOI 0.1 +0.3 +0.8 -0.3 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.4 -0.4 -0.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.1 +0.9 -0.2 +0.5 N.D.
nitrogen source L-Glutamic (N) +0.7 +0.8 +0.1 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.3 -0.3 +0.9 N.D.
phage 36hr PHYTO7 MOI 1 +0.5 +0.6 +0.4 +0.2 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.3 +4.6 +0.6 -0.2 N.D.
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