Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20785	BPHYT_RS20790	BPHYT_RS20795	BPHYT_RS20800	BPHYT_RS20805
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	-4.4	+0.1	-0.4	+0.2
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.5	-4.1	+0.2	+0.4	-0.0
carbon source	2-Deoxy-D-Ribose (C)	-0.5	-3.2	-0.1	+0.1	+0.2
carbon source	Malonic (C)	-0.2	-2.5	-0.8	+0.1	+0.3
carbon source	2-Deoxy-D-Ribose (C)	-0.1	-2.3	-0.5	-0.2	-0.1
carbon source	2-Deoxy-D-Ribose (C)	+0.1	-2.7	-0.3	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-2.4	-0.6	+0.4	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.0	-3.2	+0.6	+0.5	-0.3
phage	24hr PHYTO11 MOI 1	+0.2	-2.2	-0.2	+0.1	-0.4
phage	24hr PHYTO9 MOI 10	+0.5	-2.3	+0.1	-0.4	-0.2
supernatant control	Vogels_fungal_media 0.1X	-0.2	-1.9	+0.1	-0.8	+0.6
carbon source	L-Fucose (C)	+0.0	-2.3	-0.2	+0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-1.1	-0.8	-0.0	-0.3	+0.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.4	-1.2	+0.5	+0.3	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0	-1.5	+0.6	+0.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-1.9	+0.9	+0.4	-0.6
phage	P. phyto PHYTO2 MOI 1	-0.2	-2.1	+0.5	-0.1	+0.5
phage	36hr PHYTO8 MOI 10	+0.4	-1.3	+0.3	+0.2	-0.7
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.6	-1.5	+0.5	+0.2	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	-0.9	-0.3	+0.5	-0.7
phage	24hr PHYTO3 MOI 10	+0.2	-1.8	+0.7	+0.2	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	+0.6	-1.3	+0.5	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.9	+0.5	+0.2	+1.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.6	+1.2	-0.2	+0.4	+0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.3	+1.8	-0.2	-0.5	+0.3
phage	36hr PHYTO8 MOI 10	-0.3	+1.7	+0.2	+0.4	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.1	+2.1	-0.4	-0.0	+0.5
nophagecontrol	36hr Phyto Lib Only	+0.8	+1.8	+0.1	+0.4	+0.3
phage	36hr PHYTO11 MOI 0.1	+0.8	+2.0	+0.3	-0.0	+1.0
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.3	+3.9	-0.2	+0.3	+4.6