Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20735	BPHYT_RS20740	BPHYT_RS20745	BPHYT_RS20750	BPHYT_RS20755
phage	24hr PHYTO11 MOI 0.1	N.D.	N.D.	-0.9	-2.4	-0.7
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	-0.4	-2.3	-1.2
carbon source	L-Arabinose (C)	N.D.	N.D.	-0.2	-1.8	-0.6
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	N.D.	-0.5	-1.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.5	-0.2	-1.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.6	-1.3	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	-0.6	-1.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.1	-1.6	-0.1
carbon source	Suberic (C)	N.D.	N.D.	+0.1	-2.2	+0.5
carbon source	Phenylacetic 5 mM (C)	N.D.	N.D.	-0.3	-1.3	+0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	-1.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.8	-2.3	+0.4
phage	36hr PHYTO2 MOI 1	N.D.	N.D.	-1.7	+0.5	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.5	-1.1	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.6	-1.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.5	-1.3	+0.0
vitamin	With vitamins t1	N.D.	N.D.	+0.1	-1.3	+0.6
nitrogen source	L-Lysine (N)	N.D.	N.D.	+0.5	-1.2	+0.3
phage	36hr PHYTO2 MOI 1	N.D.	N.D.	-1.0	+1.0	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	+0.7	-0.9	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+1.2	-1.0	+0.0
phage	36hr PHYTO7 MOI 0.1	N.D.	N.D.	-0.1	+1.0	-0.7
phage	24hr PHYTO7 MOI 1	N.D.	N.D.	-0.7	+0.8	+0.4
phage	24hr PHYTO3 MOI 10	N.D.	N.D.	-0.2	+1.6	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	N.D.	+0.7	-0.6	+0.7
nophagecontrol	36hr Phyto Lib only	N.D.	N.D.	+0.5	+1.3	-0.7
phage	24hr PHYTO4 MOI 0.1	N.D.	N.D.	-0.5	+1.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.9	-0.7	+0.9
carbon source	Dodecandioic (C)	N.D.	N.D.	+0.4	+1.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	+2.8	+1.3