Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS20695 and BPHYT_RS20700 are separated by 122 nucleotidesBPHYT_RS20700 and BPHYT_RS20705 are separated by 471 nucleotidesBPHYT_RS20705 and BPHYT_RS20710 are separated by 2 nucleotidesBPHYT_RS20710 and BPHYT_RS20715 are separated by 2 nucleotides BPHYT_RS20695: BPHYT_RS20695 - ribokinase, at 203,468 to 204,400 _RS20695 BPHYT_RS20700: BPHYT_RS20700 - nucleoside hydrolase, at 204,523 to 205,626 _RS20700 BPHYT_RS20705: BPHYT_RS20705 - Chase2 sensor protein, at 206,098 to 207,810 _RS20705 BPHYT_RS20710: BPHYT_RS20710 - hypothetical protein, at 207,813 to 208,193 _RS20710 BPHYT_RS20715: BPHYT_RS20715 - peptidase, at 208,196 to 209,902 _RS20715
Group Condition BPHYT_RS20695 BPHYT_RS20700 BPHYT_RS20705 BPHYT_RS20710 BPHYT_RS20715
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 -0.1 -0.7 -0.6 -1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -0.0 +0.2 -0.1 -1.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.6 -0.8 -1.2 +0.4
phage 36hr PHYTO10 MOI 10 -1.7 +0.1 +0.2 -0.3 -0.7
carbon source D-Ribose (C) -3.4 -0.1 +0.4 -0.0 +0.7
phage 36hr PHYTO6 MOI 10 -2.0 -0.2 +0.0 -0.2 +0.2
phage 24hr PHYTO7 MOI 10 +0.0 -0.1 -0.1 +0.5 -2.3
phage 36hr PHYTO1 MOI 10 -1.5 +0.2 -0.1 +0.5 -1.1
nitrogen source L-Citrulline (N) +0.5 +0.3 -0.0 -0.3 -2.2
phage 36hr PHYTO8 MOI 10 -2.1 +0.2 +0.2 -0.2 +0.3
carbon source Suberic (C) -1.4 +0.9 +0.3 -0.3 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.4 -0.1 +0.5 -0.8 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +0.2 -1.5 -0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.4 -0.6 -0.8 +0.9
phage 24hr PHYTO8 MOI 1 -1.1 +0.5 +0.6 -0.3 -0.5
phage 36hr PHYTO11 MOI 1 -1.0 +0.1 -0.0 -0.7 +1.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.7 -0.1 -0.8 +0.6
phage 24hr PHYTO1 MOI 10 -0.9 +0.2 +0.1 -0.5 +1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -1.1 +1.1 +0.1 +0.2 -0.3
phage 36hr PHYTO4 MOI 0.1 -0.8 +0.4 +0.2 -0.5 +0.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.5 +1.9 -0.2 +0.2 -0.9
nitrogen source L-Lysine (N) +1.1 -0.1 -0.8 -0.4 +0.8
carbon source Sebacic (C) -0.3 +0.8 +1.0 -0.1 -0.7
carbon source Protocatechuic Acid (C) -0.4 +0.8 +0.8 +0.2 -0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.5 +2.1 +0.2 -0.3 -0.4
phage P. phyto PHYTO2 MOI 0.1 +0.4 +0.3 +1.1 -0.9 +0.6
phage 36hr PHYTO2 MOI 0.1 -0.8 +0.3 +0.6 +0.1 +1.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.3 -0.1 +0.9 -0.0 +1.4
phage 24hr PHYTO9 MOI 10 +0.9 -0.5 +0.6 -0.4 +1.4
supernatant control Vogels_fungal_media; pH 5.5 -0.9 +1.2 +0.2 +0.4 +1.5
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BPHYT_RS20695
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BPHYT_RS20700
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BPHYT_RS20710
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BPHYT_RS20715
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