Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20685	BPHYT_RS20690	BPHYT_RS20695	BPHYT_RS20700	BPHYT_RS20705
carbon source	D-Ribose (C)	-2.8	-1.4	-3.4	-0.1	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.5	-1.3	-0.6	+0.0	+0.3
phage	36hr PHYTO6 MOI 10	+0.2	-0.1	-2.0	-0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.8	-1.5	-0.1	-0.7
phage	36hr PHYTO8 MOI 10	-0.2	+0.5	-2.1	+0.2	+0.2
nitrogen source	L-Lysine (N)	-0.3	-1.2	+1.1	-0.1	-0.8
phage	24hr PHYTO2 MOI 0.1	+0.2	-0.1	-1.9	+0.0	+0.6
phage	24hr PHYTO4 MOI 0.1	+0.4	-0.2	-1.6	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.2	+0.8	+0.2	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.3	-1.4	-0.1	+0.5
phage	36hr PHYTO1 MOI 10	+0.1	+0.8	-1.5	+0.2	-0.1
phage	36hr PHYTO10 MOI 10	+0.3	+0.8	-1.7	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.7	-0.4	+0.5	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+0.0	-1.1	+1.1	+0.1
carbon source	Suberic (C)	-0.4	+0.6	-1.4	+0.9	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	-0.1	-0.9	+1.2	+0.2
carbon source	propionate (C)	-0.3	+0.3	-0.9	+0.7	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	+0.4	-0.8	+0.8	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.5	+0.6	+0.5	-0.6
phage	24hr PHYTO6 MOI 1	+0.1	+0.9	-0.9	+0.4	+0.3
phage	36hr PHYTO2 MOI 1	+0.4	+1.0	-0.6	+0.3	-0.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.3	+0.5	+1.1	+0.2	-0.5
carbon source	adipate (C)	-0.2	+1.0	-0.4	+0.4	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.3	-0.5	+1.9	-0.2
carbon source	Protocatechuic Acid (C)	-0.3	+0.3	-0.4	+0.8	+0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.2	-0.5	+2.1	+0.2
carbon source	Sebacic (C)	-0.3	+0.2	-0.3	+0.8	+1.0
carbon source	succinate (C)	-0.5	+0.7	+0.2	+1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+1.6	-0.2	+0.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.8	+0.5	+0.1	+1.2