Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20635	BPHYT_RS20640	BPHYT_RS20645	BPHYT_RS20650	BPHYT_RS20655
phage	24hr PHYTO3 MOI 10	-0.6	-0.2	-0.7	+0.1	-0.7
phage	36hr PHYTO3 MOI 1	-0.6	-0.2	-0.6	-0.6	+0.3
phage	36hr PHYTO6 MOI 0.1	-0.3	-0.4	-0.1	-0.7	-0.2
phage	24hr PHYTO11 MOI 0.1	-0.0	+0.1	-1.5	-0.0	+0.0
phage	36hr PHYTO8 MOI 10	-0.4	-0.4	-0.5	+0.5	-0.5
phage	36hr PHYTO2 MOI 1	-0.6	-0.5	-0.3	+0.3	-0.0
phage	24hr PHYTO6 MOI 10	-0.9	+0.4	-0.6	+0.0	-0.0
phage	P. phyto PHYTO2 MOI 1	+0.2	-0.3	-1.1	+0.6	-0.4
phage	36hr PHYTO11 MOI 0.1	-0.3	-0.6	-0.4	+0.4	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.1	-0.6	-0.1	+0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.7	+0.1	+1.3	-1.1	-0.3
phage	36hr PHYTO1 MOI 10	-0.6	+0.3	-0.3	+0.3	-0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.0	-0.0	+0.1	-1.1	+0.5
carbon source	Disodium Glutarate (C)	-0.2	-0.1	+0.3	-0.8	+0.4
carbon source	Protocatechuic Acid (C)	-0.0	-0.1	+0.4	-0.8	+0.3
phage	36hr PHYTO9 MOI 1	-0.6	-0.2	-0.1	+0.3	+0.4
phage	36hr PHYTO6 MOI 0.1	-0.7	-0.2	+0.5	+0.3	+0.0
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.0	+0.4	+0.4	-0.7	-0.2
carbon source	adipate (C)	-0.4	+0.3	+0.4	-0.8	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.4	+0.2	-0.6	+0.8	-0.1
stress	Chloride 200 mM	-0.4	-0.3	-0.2	+0.5	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.3	+0.3	+0.2	+0.4
phage	24hr PHYTO7 MOI 1	-0.4	-0.6	+0.6	+0.6	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.1	-0.4	+0.6	-0.2
motility	outer cut, LB soft agar motility assay	-0.7	-0.1	+0.0	+0.5	+0.5
motility	outer cut, LB soft agar motility assay	-0.1	+0.4	-0.7	+0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.1	-0.4	+0.8	+0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.4	+0.4	-0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.1	-0.3	+0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.2	+0.1	+1.2	-0.2