Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20500	BPHYT_RS20505	BPHYT_RS20510	BPHYT_RS20515	BPHYT_RS20520
supernatant control	Vogels_fungal_media; pH 5.5	-0.0	+0.6	N.D.	+0.7	-5.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	-2.5	N.D.	+0.3	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-1.7	N.D.	-0.8	-0.4
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.5	-1.2	N.D.	-0.7	+0.2
nitrogen source	L-Serine (N)	+0.2	-2.4	N.D.	-0.0	+0.1
carbon source	m-Inositol (C)	-0.1	-1.7	N.D.	-0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.3	N.D.	-1.1	-1.1
phage	36hr PHYTO3 MOI 1	-0.2	-0.4	N.D.	+0.5	-1.6
nitrogen source	Putrescine (N)	+0.0	-0.9	N.D.	-1.2	+0.6
phage	36hr PHYTO8 MOI 10	-0.2	+0.2	N.D.	-1.9	+0.8
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.1	+0.7	N.D.	+0.0	-1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.8	N.D.	-0.2	-1.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.1	-1.1	N.D.	-0.6	+1.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.3	+0.6	N.D.	-1.6	+0.5
carbon source	Phenylacetic 5 mM (C)	-0.4	-0.9	N.D.	+0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+2.0	N.D.	-0.8	-0.9
nophagecontrol	36hr Phyto Lib only	-0.2	-1.0	N.D.	+1.3	+0.4
vitamin	No vitamins t2	-0.3	+1.5	N.D.	-0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.5	N.D.	+1.3	-1.4
carbon source	Phenylacetic 5 mM (C)	-0.1	-1.5	N.D.	+1.7	+0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	-0.9	N.D.	+0.7	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.9	N.D.	+0.8	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.9	N.D.	-1.7	+1.9
carbon source	Tween 20 (C)	+0.5	-0.7	N.D.	+1.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+1.3	N.D.	+0.9	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.1	-0.2	N.D.	+1.2	+1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.7	N.D.	-0.0	+1.9
carbon source	Sebacic (C)	-0.0	+0.4	N.D.	+0.8	+1.3
carbon source	D-Glucose (C)	+0.0	+1.2	N.D.	+0.3	+1.2
carbon source	Malonic (C)	+0.2	+2.0	N.D.	+0.3	+0.2