Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20450	BPHYT_RS20455	BPHYT_RS20460	BPHYT_RS20465	BPHYT_RS20470
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.5	-0.4	+0.1	-0.7	-1.1
supernatant control	Vogels_fungal_media; pH 5.5	-0.1	+0.1	-0.3	-0.4	-1.4
nitrogen source	L-Glutamic (N)	-0.3	-0.3	-0.5	-0.7	+0.0
carbon source	D-Glucose 20 mM (C)	+0.2	-0.3	+0.3	-0.4	-1.2
carbon source	Phenylacetic 5 mM (C)	+0.1	-0.2	+0.2	-0.6	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.5	-0.1	+0.0	+0.5	-0.8
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.3	+0.3	-0.1	-0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.0	+0.4	+0.2	-0.4	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-0.6	+0.0	+0.7	-0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.5	-0.2	+0.2	-0.5	+0.5
phage	36hr PHYTO3 MOI 1	+0.5	+0.0	-0.1	-1.2	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.0	+0.4	-0.6	+0.4
phage	24hr PHYTO9 MOI 10	+0.2	+0.4	+0.3	-0.6	-0.5
phage	24hr PHYTO4 MOI 10	+0.2	+0.4	-0.1	-0.9	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.7	+0.5	+0.4	+0.4	-0.5
supernatant control	Vogels_fungal_media 0.1X	-0.6	+0.1	-0.2	+1.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.5	+0.3	+0.5	-1.0
motility	outer cut, LB soft agar motility assay	-0.7	+0.1	-0.2	+0.5	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.5	-0.3	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.1	-0.4	+1.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.2	+0.2	-0.3	+0.8
supernatant control	Vogels_fungal_media 0.1X	+0.1	-0.6	+0.1	+1.2	-0.1
phage	24hr PHYTO1 MOI 10	+0.4	+0.1	-0.4	-0.2	+0.8
motility	inner cut, LB soft agar motility assay	-0.2	+0.6	-0.3	+0.9	-0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.1	+0.4	+0.8	-0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.8	+0.2	+0.2	-0.7	+0.6
carbon source	Xylitol (C)	-0.2	+0.5	-0.1	+0.6	+0.6
phage	24hr PHYTO4 MOI 0.1	+0.2	-0.1	-0.1	+0.7	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.6	+0.2	-0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.2	+0.3	+1.6	+1.1