Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20445	BPHYT_RS20450	BPHYT_RS20455	BPHYT_RS20460	BPHYT_RS20465
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.5	-0.4	+0.1	-0.7
nitrogen source	L-Glutamic (N)	-0.0	-0.3	-0.3	-0.5	-0.7
carbon source	Sebacic (C)	-0.2	-0.1	+0.2	-0.1	-1.1
carbon source	Phenylacetic 5 mM (C)	-0.5	+0.1	-0.2	+0.2	-0.6
phage	36hr PHYTO3 MOI 1	+0.1	+0.5	+0.0	-0.1	-1.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.3	-0.5	-0.2	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.6	-0.1	+0.1	+0.5
phage	36hr PHYTO2 MOI 1	-0.1	-0.2	+0.1	+0.5	-0.7
nophagecontrol	36hr Phyto Lib only	+0.5	+0.1	-0.2	-0.0	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.4	-0.0	+0.4	-0.6
nitrogen source	L-Citrulline (N)	-0.2	+0.6	+0.3	-0.3	-0.5
supernatant control	Vogels_fungal_media 0.1X	-0.2	-0.6	+0.1	-0.2	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	-0.1	-0.6	+0.0	+0.7
phage	24hr PHYTO4 MOI 10	+0.6	+0.2	+0.4	-0.1	-0.9
phage	36hr PHYTO8 MOI 10	+0.8	-0.7	+0.1	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.7	+0.5	+0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.5	+0.1	-0.4	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	-0.5	+0.1	+0.2	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.2	+0.8	+0.2	+0.2	-0.7
vitamin	No vitamins t2	+0.3	+0.5	-0.2	+0.4	-0.3
motility	inner cut, LB soft agar motility assay	-0.2	-0.2	+0.6	-0.3	+0.9
supernatant control	Vogels_fungal_media 0.1X	+0.2	+0.1	-0.6	+0.1	+1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.5	+0.5	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.3	+0.4	-0.0	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.4	+0.2	+0.1	+0.8
carbon source	Malonic (C)	+0.5	+0.4	+0.3	+0.2	-0.3
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.5	+0.1	-0.2	+0.1	+0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.4	-0.1	-0.1	+0.9
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.4	+0.5	+0.4	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.0	+0.2	+0.3	+1.6