Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS20435 and BPHYT_RS20440 are separated by 238 nucleotidesBPHYT_RS20440 and BPHYT_RS20445 are separated by 15 nucleotidesBPHYT_RS20445 and BPHYT_RS20450 are separated by 51 nucleotidesBPHYT_RS20450 and BPHYT_RS20455 are separated by 108 nucleotides BPHYT_RS20435: BPHYT_RS20435 - MFS transporter, at 147,155 to 148,531 _RS20435 BPHYT_RS20440: BPHYT_RS20440 - IclR family transcriptional regulator, at 148,770 to 149,552 _RS20440 BPHYT_RS20445: BPHYT_RS20445 - NAD-dependent dehydratase, at 149,568 to 150,632 _RS20445 BPHYT_RS20450: BPHYT_RS20450 - 6-chlorohydroxyquinol-1,2-dioxygenase, at 150,684 to 151,547 _RS20450 BPHYT_RS20455: BPHYT_RS20455 - hypothetical protein, at 151,656 to 152,333 _RS20455
Group Condition BPHYT_RS20435 BPHYT_RS20440 BPHYT_RS20445 BPHYT_RS20450 BPHYT_RS20455
phage 24hr PHYTO2 MOI 1 -0.0 -3.7 -0.1 +0.1 +0.1
phage 36hr PHYTO6 MOI 1 -0.1 -3.4 +0.1 -0.3 +0.1
phage 24hr PHYTO9 MOI 10 -0.1 -3.9 +0.1 +0.2 +0.4
phage 36hr PHYTO6 MOI 10 +0.3 -3.3 +0.4 -0.0 -0.3
phage 24hr PHYTO7 MOI 1 -0.3 -2.7 -0.1 -0.0 +0.2
phage 36hr PHYTO9 MOI 1 +0.2 -3.6 +0.3 -0.0 +0.2
phage 36hr PHYTO10 MOI 10 +0.0 -1.9 +0.2 -0.4 -0.1
supernatant control Vogels_fungal_media 0.1X -0.1 -1.7 +0.2 +0.1 -0.6
carbon source Suberic (C) -0.5 -1.4 -0.3 +0.4 -0.1
phage 24hr PHYTO3 MOI 10 -0.4 -1.6 +0.4 -0.0 -0.1
phage 24hr PHYTO MOI 0.1 +0.1 -2.0 +0.3 -0.4 +0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.2 -1.4 +0.1 -0.3 +0.1
motility inner cut, LB soft agar motility assay -0.1 -1.9 +0.1 +0.1 +0.5
phage 24hr PHYTO9 MOI 0.1 -0.1 -1.7 +0.3 +0.2 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 -1.5 +0.3 -0.1 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 -1.5 +0.1 +0.3 +0.0
phage 24hr PHYTO MOI 0.1 +0.1 -1.3 +0.2 +0.5 -0.2
nitrogen source L-Citrulline (N) -0.3 -1.0 -0.2 +0.6 +0.3
carbon source Suberic (C) +0.0 -1.5 +0.3 +0.7 -0.0
phage PHYTO3 MOI 0.1 +0.2 -1.1 +0.3 +0.2 +0.4
phage 36hr PHYTO1 MOI 1 +0.3 -0.6 -0.3 +0.7 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -1.0 +0.7 +0.5 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.0 -0.4 -0.2 +0.4
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.1 +1.0 +0.7 -0.3 -0.1
phage 36hr PHYTO2 MOI 0.1 -0.3 +1.2 +0.5 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.3 +0.9 +0.5 +0.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +1.4 -0.4 +0.3 +0.4
phage 36hr PHYTO3 MOI 1 -0.4 +1.4 +0.1 +0.5 +0.0
phage 24hr PHYTO4 MOI 10 -0.4 +1.9 +0.6 +0.2 +0.4
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.3 +1.9 +0.4 +0.5 +0.4
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