Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20420	BPHYT_RS20425	BPHYT_RS20430	BPHYT_RS20435	BPHYT_RS20440
phage	24hr PHYTO9 MOI 10	-0.1	-0.1	-0.1	-0.1	-3.9
phage	36hr PHYTO6 MOI 1	+0.4	-0.4	+0.1	-0.1	-3.4
phage	36hr PHYTO9 MOI 1	+0.1	+0.1	+0.1	+0.2	-3.6
phage	24hr PHYTO2 MOI 1	-0.0	+0.5	+0.3	-0.0	-3.7
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.2	-1.0	-0.8	-0.6	-0.5
phage	24hr PHYTO7 MOI 1	+0.2	-0.4	+0.6	-0.3	-2.7
phage	36hr PHYTO6 MOI 10	+0.1	+0.3	+0.4	+0.3	-3.3
carbon source	Suberic (C)	+0.2	-0.6	+0.2	-0.5	-1.4
motility	inner cut, LB soft agar motility assay	-0.4	-0.2	+0.6	-0.1	-1.9
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.8	-1.0	+0.3	-0.9
nophagecontrol	24hr Phyto Lib Only	-0.2	-1.9	+0.5	+0.4	-0.5
nitrogen source	L-Phenylalanine (N)	-0.1	-2.4	+0.2	-0.2	+0.9
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.1	-1.1	-0.9	-0.1	+1.0
phage	24hr PHYTO9 MOI 0.1	-0.1	+1.1	+0.4	-0.1	-1.7
phage	24hr PHYTO3 MOI 10	+0.2	+1.3	+0.2	-0.4	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.7	+2.1	+0.1	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.4	+0.7	+0.0	-1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.6	-0.5	-0.2	+1.4
phage	24hr PHYTO4 MOI 10	-0.2	-0.4	+0.4	-0.4	+1.9
phage	36hr PHYTO2 MOI 1	-0.0	+0.7	+0.7	-0.5	+1.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.0	+3.4	-1.2	+0.3	-0.3
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.3	+0.6	-0.1	+0.3	+1.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+1.3	+0.2	+0.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+1.8	-0.1	-0.0	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+1.7	+0.2	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+1.2	+0.5	+0.0	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.9	+2.5	+0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+1.8	+0.1	+0.1	+1.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+3.9	+0.4	+0.4	-0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+4.0	+0.0	+0.3	+0.5