Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20400	BPHYT_RS20405	BPHYT_RS20410	BPHYT_RS20415	BPHYT_RS20420
phage	P. phyto PHYTO2 MOI 1	N.D.	+0.0	-1.4	-0.5	+0.3
phage	36hr PHYTO1 MOI 10	N.D.	-0.2	-0.5	-0.7	+0.0
phage	P. phyto corn MOI 0.1	N.D.	-0.1	-0.9	-0.4	+0.1
carbon source	Phenylacetic 5 mM (C)	N.D.	-0.6	-0.4	-0.2	-0.1
phage	24hr PHYTO6 MOI 0.1	N.D.	+0.0	-1.0	-0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-0.4	-0.8	+0.1	-0.1
carbon source	Protocatechuic Acid (C)	N.D.	+0.1	-0.6	-0.2	-0.5
supernatant control	Vogels_fungal_media 0.1X	N.D.	-0.7	-0.5	+0.3	-0.1
phage	36hr PHYTO3 MOI 1	N.D.	-0.2	-1.1	+0.1	+0.2
carbon source	D-Glucose (C)	N.D.	+0.1	-0.8	-0.5	+0.3
carbon source	D-Glucose (C)	N.D.	+0.1	+0.3	-0.6	-0.4
phage	36hr PHYTO2 MOI 1	N.D.	+0.2	-0.4	-0.6	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	-0.9	+0.2	+0.3
nitrogen source	L-Isoleucine (N)	N.D.	-0.2	+0.6	-0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	-0.4	-0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.3	-0.3	-0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.5	-0.5	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	-0.5	+0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.3	-0.6	+0.7	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.3	-0.3	+0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	-0.5	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.1	-0.6	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	-0.5	+0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.8	+0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	-0.2	-0.1	+0.8
temperature	LB 37C	N.D.	+0.0	-0.2	+1.2	-0.0
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	N.D.	-0.2	+0.6	+0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.0	+0.7	-0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.2	+0.9	-0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.1	+0.3	+0.9	+0.0