Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20385	BPHYT_RS20390	BPHYT_RS20395	BPHYT_RS20400	BPHYT_RS20405
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.3	-0.4	-0.3	N.D.	-0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.4	-0.3	-0.2	N.D.	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.5	-0.5	-0.1	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	+0.1	-0.7	N.D.	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.5	-0.3	N.D.	+0.2
phage	24hr PHYTO11 MOI 1	-0.3	-0.7	+0.1	N.D.	+0.1
phage	36hr PHYTO8 MOI 0.1	-0.1	-0.4	+0.2	N.D.	-0.5
supernatant control	Vogels_fungal_media 0.1X	+0.4	-0.7	+0.2	N.D.	-0.7
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.2	-0.2	N.D.	-0.4
carbon source	Phenylacetic 5 mM (C)	+0.2	-0.1	-0.2	N.D.	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	-0.4	-0.1	N.D.	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	-0.3	-0.1	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.4	+0.2	N.D.	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	+0.3	-0.5	+0.0	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.5	+0.2	N.D.	+0.1
phage	36hr PHYTO10 MOI 10	+0.3	-0.2	+0.3	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.3	+0.6	N.D.	-0.2
phage	24hr PHYTO10 MOI 10	+0.3	-0.3	+0.3	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.4	+0.4	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+0.0	+0.3	N.D.	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.2	+0.3	N.D.	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.1	+0.3	N.D.	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.1	+0.9	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	-0.4	+0.6	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-0.1	+0.7	N.D.	+0.4
phage	36hr PHYTO3 MOI 1	+0.6	+0.0	+0.3	N.D.	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	-0.0	+0.8	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.4	+0.2	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.0	+0.1	+0.1	N.D.	+0.1
phage	36hr PHYTO2 MOI 1	+0.5	+0.3	+0.5	N.D.	+0.1