Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20140	BPHYT_RS20145	BPHYT_RS20150	BPHYT_RS20155	BPHYT_RS20160
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	N.D.	-3.8	-1.9	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	N.D.	-0.6	-2.6	-0.5
phage	24hr PHYTO7 MOI 10	-0.3	N.D.	-2.0	-1.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	N.D.	-1.1	-1.1	-1.0
phage	36hr PHYTO9 MOI 0.1	-0.2	N.D.	-1.4	-1.7	-0.1
phage	24hr PHYTO6 MOI 10	-0.1	N.D.	-1.8	-1.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	N.D.	-1.9	-1.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	N.D.	-0.2	-1.6	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	N.D.	-1.3	-0.9	-0.5
phage	36hr PHYTO9 MOI 1	-0.6	N.D.	-0.7	-1.6	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	N.D.	-0.1	-2.1	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.2	N.D.	+0.8	-2.2	-0.9
carbon source	Protocatechuic Acid (C)	-0.0	N.D.	+0.7	-2.5	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	N.D.	+1.0	-2.5	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	N.D.	-0.9	-1.7	+0.8
motility	outer cut, LB soft agar motility assay	+0.1	N.D.	-0.0	-2.3	+0.5
phage	P. phyto PHYTO2 MOI 1	+0.1	N.D.	+0.5	-2.3	+0.2
phage	24hr PHYTO1 MOI 10	+0.1	N.D.	-0.5	-1.7	+0.6
vitamin	With vitamins t1	+0.1	N.D.	+0.8	-1.0	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	N.D.	+1.0	-1.3	-0.7
carbon source	Sebacic (C)	-0.1	N.D.	+1.0	-1.9	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	N.D.	+1.3	-2.0	+0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.6	N.D.	+0.5	-1.3	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.8	N.D.	-0.1	-1.1	+0.9
carbon source	Azelaic (C)	+0.3	N.D.	+1.6	-0.8	-0.1
phage	P. phyto PHYTO2 MOI 1	-0.1	N.D.	-0.8	+1.4	+0.6
carbon source	D-Glucose (C)	+0.4	N.D.	+1.1	+1.0	-0.6
phage	24hr PHYTO4 MOI 10	-0.4	N.D.	+1.1	+1.4	+0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.8	N.D.	+0.7	+1.3	-0.0
carbon source	adipate (C)	+0.2	N.D.	+1.6	+0.3	+0.7