Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS20105 and BPHYT_RS20110 are separated by 66 nucleotidesBPHYT_RS20110 and BPHYT_RS20115 are separated by 25 nucleotidesBPHYT_RS20115 and BPHYT_RS20120 are separated by 182 nucleotidesBPHYT_RS20120 and BPHYT_RS20125 are separated by 396 nucleotides BPHYT_RS20105: BPHYT_RS20105 - nitrate ABC transporter substrate-binding protein, at 53,379 to 54,419 _RS20105 BPHYT_RS20110: BPHYT_RS20110 - sensor histidine kinase, at 54,486 to 55,868 _RS20110 BPHYT_RS20115: BPHYT_RS20115 - transcriptional regulator, at 55,894 to 56,592 _RS20115 BPHYT_RS20120: BPHYT_RS20120 - porin, at 56,775 to 57,899 _RS20120 BPHYT_RS20125: BPHYT_RS20125 - histidine kinase, at 58,296 to 58,511 _RS20125
Group Condition BPHYT_RS20105 BPHYT_RS20110 BPHYT_RS20115 BPHYT_RS20120 BPHYT_RS20125
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.1 -1.3 -1.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -2.0 +0.3 -1.0 -0.3 N.D.
phage 36hr PHYTO7 MOI 0.1 -1.8 -0.2 +0.7 -0.8 N.D.
phage 24hr PHYTO7 MOI 10 +0.2 +0.2 -1.7 -0.3 N.D.
phage 36hr PHYTO4 MOI 1 +0.1 +0.3 -1.3 -0.7 N.D.
nophagecontrol 24hr Phyto Lib only +0.6 +0.1 -0.8 -1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -1.0 -0.5 +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.8 -0.6 +0.9 N.D.
phage P. phyto PHYTO2 MOI 1 +0.3 +0.5 +0.7 -2.3 N.D.
phage 24hr PHYTO6 MOI 1 -0.6 -0.5 +1.2 -0.6 N.D.
phage 36hr PHYTO11 MOI 1 +0.9 +0.0 +0.7 -1.3 N.D.
phage 36hr PHYTO10 MOI 1 -1.0 -0.2 +1.5 +0.3 N.D.
phage 36hr PHYTO1 MOI 1 +0.3 +0.3 +1.1 -1.0 N.D.
phage 24hr PHYTO1 MOI 10 +0.3 -0.2 +1.5 -0.9 N.D.
phage 24hr PHYTO MOI 0.1 -0.8 -0.0 +1.4 +0.2 N.D.
phage 36hr PHYTO2 MOI 1 +1.0 +0.5 +0.6 -1.4 N.D.
carbon source Phenylacetic 5 mM (C) +0.7 -1.0 +0.1 +1.0 N.D.
nophagecontrol 36hr Phyto Lib Only +0.3 +0.4 +1.1 -0.9 N.D.
nophagecontrol 36hr Phyto Lib only +0.9 +0.0 +1.0 -1.0 N.D.
phage 36hr PHYTO MOI 0.1 +0.7 +0.3 +0.8 -0.8 N.D.
phage 36hr PHYTO9 MOI 0.1 +0.8 +0.2 +1.0 -0.8 N.D.
phage 24hr PHYTO3 MOI 10 -0.4 +0.3 +1.7 -0.3 N.D.
phage 36hr PHYTO11 MOI 0.1 +0.6 +0.0 +1.5 -0.8 N.D.
phage 24hr PHYTO3 MOI 0.1 +0.9 +0.1 +1.1 -0.6 N.D.
phage 36hr PHYTO11 MOI 1 +0.8 -0.1 +1.2 -0.5 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.4 -0.1 +1.2 +1.0 N.D.
phage 24hr PHYTO4 MOI 0.1 +0.5 +0.2 +1.5 -0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.0 +0.5 +1.0 +1.0 N.D.
phage 24hr PHYTO6 MOI 10 +0.3 +0.7 +1.5 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.8 +0.7 -0.0 +0.3 N.D.
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