Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20075	BPHYT_RS20080	BPHYT_RS20085	BPHYT_RS20090	BPHYT_RS20095
carbon source	Trisodium citrate (C)	N.D.	N.D.	-2.3	-3.5	-4.8
r2a control	R2A control	N.D.	N.D.	-0.1	-0.4	-4.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.5	-0.4	-3.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-1.5	-1.1	-2.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-3.1	-0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-2.5	-0.7	-0.9
phage	24hr PHYTO7 MOI 1	N.D.	N.D.	+0.6	+0.2	-4.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	+0.7	-0.0	-4.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.0	-0.3	-2.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-1.9	-0.5	-0.8
phage	36hr PHYTO8 MOI 10	N.D.	N.D.	-0.6	-0.7	-1.8
phage	24hr PHYTO4 MOI 10	N.D.	N.D.	+0.1	-0.2	-3.0
carbon source	Sebacic (C)	N.D.	N.D.	-0.7	-0.4	-1.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	N.D.	-0.8	+0.6	-2.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.0	-0.1	-2.7
r2a control	R2A control	N.D.	N.D.	+0.2	-0.5	-2.5
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	N.D.	N.D.	-1.0	+0.1	-1.8
phage	24hr PHYTO6 MOI 10	N.D.	N.D.	+0.7	+0.2	-3.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	+0.9	-0.5	-1.4
phage	P. phyto PHYTO2 MOI 0.1	N.D.	N.D.	+1.2	-0.8	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-1.1	-0.3	+1.6
carbon source	Malonic (C)	N.D.	N.D.	+0.7	-0.1	+2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.8	-0.1	+2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.1	+0.1	+2.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+1.0	+0.2	+1.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.8	+3.0	+0.8
supernatant control	Vogels_fungal_media 0.1X	N.D.	N.D.	+0.5	+0.2	+2.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.6	+3.2	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	+1.1	+0.2	+2.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	+3.1	+0.8