Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19985	BPHYT_RS19990	BPHYT_RS19995	BPHYT_RS20000	BPHYT_RS20005
phage	36hr PHYTO1 MOI 10	-3.6	-0.3	-0.8	-0.6	-0.2
phage	36hr PHYTO1 MOI 1	-3.6	-0.5	-0.3	-0.8	+0.2
nophagecontrol	36hr Phyto Lib Only	-3.4	-0.4	-0.5	-0.9	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.3	-0.4	+0.1	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.6	-0.1	-0.5	+0.8	+0.1
phage	24hr PHYTO3 MOI 10	-3.8	-0.2	+0.2	-0.6	+0.2
phage	PHYTO3 MOI 0.1	-3.1	-0.8	-0.2	-0.1	+0.1
phage	24hr PHYTO MOI 0.1	-2.0	-0.4	-0.3	-1.5	+0.2
phage	24hr PHYTO1 MOI 10	-2.1	-0.1	+0.0	-1.8	+0.2
phage	36hr PHYTO7 MOI 1	-3.3	-0.2	+0.1	-0.4	+0.3
phage	36hr PHYTO1 MOI 10	-2.1	-0.3	+0.1	-1.4	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-3.0	-0.3	-0.7	+0.5	+0.2
phage	36hr PHYTO6 MOI 0.1	-2.0	-0.2	-0.3	-0.8	+0.1
phage	36hr PHYTO3 MOI 1	-2.1	-0.6	-0.3	-0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-2.7	-0.0	-0.0	-0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.2	+0.1	+0.1	-0.6	-0.0
phage	24hr PHYTO MOI 0.1	-1.9	-0.4	-0.3	-0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-2.4	-0.2	-0.4	+0.3	+0.0
phage	24hr PHYTO1 MOI 10	-2.0	-0.3	-0.6	+0.3	+0.1
phage	36hr PHYTO10 MOI 10	-0.2	-0.6	-0.2	-1.7	+0.3
phage	36hr PHYTO4 MOI 0.1	-0.8	-0.6	+0.0	-1.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.7	+0.2	+0.1	-1.0	+0.1
carbon source	Malonic (C)	-2.5	-0.3	-0.2	+0.8	-0.1
phage	36hr PHYTO6 MOI 1	-0.0	-0.6	-0.4	-1.6	+0.4
phage	24hr PHYTO11 MOI 0.1	-1.7	-0.2	-0.4	+0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	+0.2	+0.8	-0.9	-0.1
phage	36hr PHYTO8 MOI 10	+1.1	-0.2	-0.0	-1.6	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.1	-0.4	+0.7	+1.0	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.8	-0.6	+1.7	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+3.6	+0.1	+0.4	+0.2	+0.2