Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19925 and BPHYT_RS19930 overlap by 1 nucleotidesBPHYT_RS19930 and BPHYT_RS19935 are separated by 24 nucleotidesBPHYT_RS19935 and BPHYT_RS19940 are separated by 5 nucleotidesBPHYT_RS19940 and BPHYT_RS19945 are separated by 470 nucleotides BPHYT_RS19925: BPHYT_RS19925 - peptidase C39, at 14,550 to 17,606 _RS19925 BPHYT_RS19930: BPHYT_RS19930 - transcriptional regulator, at 17,606 to 18,961 _RS19930 BPHYT_RS19935: BPHYT_RS19935 - protein serine/threonine phosphatase, at 18,986 to 19,756 _RS19935 BPHYT_RS19940: BPHYT_RS19940 - hypothetical protein, at 19,762 to 20,049 _RS19940 BPHYT_RS19945: BPHYT_RS19945 - hypothetical protein, at 20,520 to 21,017 _RS19945
Group Condition BPHYT_RS19925 BPHYT_RS19930 BPHYT_RS19935 BPHYT_RS19940 BPHYT_RS19945
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 -0.4 -0.2 +0.1 -2.4
phage 36hr PHYTO6 MOI 10 -0.3 -0.7 +0.1 +0.3 -1.9
phage 36hr PHYTO1 MOI 1 +0.1 -0.8 +0.3 -0.2 -1.4
nitrogen source L-Lysine (N) -0.5 -0.1 -1.6 +0.3 +0.2
phage 36hr PHYTO11 MOI 1 -0.2 -0.6 -0.5 +0.4 -0.9
phage 24hr PHYTO3 MOI 1 +0.1 -1.2 +0.5 +0.2 -1.4
phage 36hr PHYTO8 MOI 10 +0.0 -0.8 +0.4 +0.4 -1.8
phage 36hr PHYTO2 MOI 1 +0.5 -0.9 +0.5 +0.3 -2.0
phage 36hr PHYTO1 MOI 1 -0.0 -0.6 +0.5 +0.4 -1.7
phage 24hr PHYTO6 MOI 0.1 -0.5 -0.7 +0.3 +0.4 -0.9
phage 36hr PHYTO MOI 0.1 -0.0 -0.6 +0.5 +0.4 -1.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.0 +1.0 -0.4 -0.4 +0.1
phage 24hr PHYTO4 MOI 10 +0.5 -0.9 +0.1 +0.5 -0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +1.0 -0.9 -0.7 -0.1 +0.2
phage 36hr PHYTO7 MOI 1 +0.2 -0.3 +0.4 +0.5 -1.3
phage 36hr PHYTO2 MOI 1 -0.3 -0.9 +0.7 +0.6 -0.4
phage 36hr PHYTO10 MOI 10 +0.3 -1.4 +0.2 +0.7 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.8 +0.5 -0.1 +0.2 -1.2
phage 24hr PHYTO MOI 0.1 +0.2 +0.5 +0.1 +1.0 -1.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.9 +0.3 +1.7 -0.3 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -0.2 +1.2 -0.6 -0.4
phage 36hr PHYTO3 MOI 0.1 +0.2 -0.7 +0.6 +0.8 -0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.7 -0.3 +0.4 +0.7 +0.7
supernatant control Vogels_fungal_media; pH 5.5 +1.1 +0.2 -0.7 -0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +0.2 +1.0 -0.3 -0.8
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 +0.5 -0.2 +0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.2 +0.4 +0.4 +1.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.3 +0.4 -0.4 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.6 +0.8 +0.5 +0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +0.1 +1.0 -0.0 +0.9
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