Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS19885	BPHYT_RS19890	BPHYT_RS19895	BPHYT_RS19900	BPHYT_RS19905
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+1.0	-6.2	+0.8	N.D.	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-4.0	-0.2	N.D.	+0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.3	-1.5	-1.3	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.2	-1.2	N.D.	-2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-1.7	+0.2	N.D.	-0.9
phage	36hr PHYTO1 MOI 1	+0.2	-1.2	+1.0	N.D.	-2.5
phage	24hr PHYTO3 MOI 10	+0.4	-1.8	+0.2	N.D.	-1.3
phage	24hr PHYTO8 MOI 1	+0.1	-0.7	+0.7	N.D.	-2.1
phage	36hr PHYTO4 MOI 1	+0.9	-0.6	-0.4	N.D.	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.5	-1.5	-0.2	N.D.	+1.0
phage	24hr PHYTO3 MOI 1	+0.7	+0.6	+0.4	N.D.	-2.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	-0.5	-0.6	N.D.	-0.9
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.2	-2.4	+0.2	N.D.	+1.3
phage	36hr PHYTO4 MOI 1	+0.7	-1.1	+0.3	N.D.	-0.7
phage	36hr PHYTO7 MOI 1	+0.1	-1.6	+1.1	N.D.	+0.1
phage	P. phyto corn MOI 1	-0.2	+0.9	+0.4	N.D.	-1.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	+0.4	-1.1	N.D.	+1.1
carbon source	Suberic (C)	+0.5	+0.5	+0.6	N.D.	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.4	+0.5	-0.9	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+2.0	-0.4	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+1.3	+0.3	N.D.	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+2.1	-0.5	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.3	+0.6	+1.5	N.D.	-0.6
vitamin	With vitamins t2	+0.5	+2.1	+0.3	N.D.	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+2.0	+0.1	N.D.	-0.4
vitamin	With vitamins t1	+0.4	+2.3	-0.0	N.D.	-0.4
motility	outer cut, LB soft agar motility assay	+0.3	+0.9	+0.9	N.D.	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+2.1	-0.6	N.D.	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.6	-0.4	N.D.	+4.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+1.9	-0.1	N.D.	+1.5