Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19790 and BPHYT_RS19795 overlap by 4 nucleotidesBPHYT_RS19795 and BPHYT_RS19800 overlap by 8 nucleotidesBPHYT_RS19800 and BPHYT_RS19805 overlap by 4 nucleotidesBPHYT_RS19805 and BPHYT_RS19810 are separated by 63 nucleotides BPHYT_RS19790: BPHYT_RS19790 - peptidase M23, at 4,452,301 to 4,454,715 _RS19790 BPHYT_RS19795: BPHYT_RS19795 - chemotaxis protein CheW, at 4,454,712 to 4,455,392 _RS19795 BPHYT_RS19800: BPHYT_RS19800 - chemotaxis protein CheR, at 4,455,385 to 4,456,815 _RS19800 BPHYT_RS19805: BPHYT_RS19805 - chemotaxis protein CheW, at 4,456,812 to 4,457,276 _RS19805 BPHYT_RS19810: BPHYT_RS19810 - chemotaxis protein, at 4,457,340 to 4,458,965 _RS19810
Group Condition BPHYT_RS19790 BPHYT_RS19795 BPHYT_RS19800 BPHYT_RS19805 BPHYT_RS19810
phage P. phyto PHYTO2 MOI 1 -0.4 -0.2 -0.7 -0.9 -0.6
phage P. phyto PHYTO2 MOI 0.1 -0.2 -0.1 -0.1 -1.2 -0.3
nophagecontrol 36hr Phyto Lib only -0.1 -0.1 -0.5 -0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -0.2 -0.3 -0.4 -0.2
phage P. phyto PHYTO2 MOI 1 -0.1 +0.1 -0.4 -0.5 -0.5
phage 24hr PHYTO1 MOI 1 -0.0 +0.1 -0.4 -0.3 -0.6
carbon source D-Glucose 20 mM (C) -0.2 -0.2 -0.4 -0.4 -0.3
phage 36hr PHYTO10 MOI 1 -0.0 +0.1 -0.5 -0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.3 -0.2 -0.6 -0.2
phage 36hr PHYTO1 MOI 10 +0.0 +0.1 -0.5 -0.6 -0.3
phage 36hr PHYTO11 MOI 0.1 -0.0 +0.1 -0.4 -0.4 -0.5
phage 36hr PHYTO2 MOI 0.1 -0.2 +0.1 -0.4 -0.5 -0.2
phage 36hr PHYTO11 MOI 0.1 -0.3 +0.2 -0.7 -0.5 +0.1
phage 24hr PHYTO9 MOI 10 -0.2 +0.3 -0.4 -0.2 -0.6
phage 24hr PHYTO2 MOI 1 -0.1 +0.2 -0.2 -0.9 -0.0
phage 36hr PHYTO4 MOI 1 -0.1 +0.4 -0.5 -0.4 -0.3
nophagecontrol 24hr Phyto Lib Only -0.1 +0.0 -0.4 -0.6 +0.2
phage P. phyto corn MOI 1 -0.1 +0.3 -0.4 -0.7 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.0 -0.2 -0.9 +0.2
phage 24hr PHYTO3 MOI 0.1 -0.0 +0.2 -0.4 -0.5 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.1 -0.3 +0.2 -0.2 -0.7
phage 36hr PHYTO11 MOI 1 -0.4 +0.3 -0.3 -0.5 +0.1
phage 36hr PHYTO6 MOI 1 +0.1 +0.3 -0.4 -0.4 -0.1
phage 36hr PHYTO3 MOI 1 -0.1 +0.3 -0.3 -0.5 +0.2
phage 36hr PHYTO MOI 0.1 +0.2 -0.0 -0.3 -0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.4 +0.1 -0.2 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.1 -0.2 -0.3 +0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.2 -0.2 +1.0 -0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.3 +0.1 +0.9 -0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.0 -0.1 +1.3 -0.2
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BPHYT_RS19790
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BPHYT_RS19795
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