Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19780 and BPHYT_RS19785 are separated by 60 nucleotidesBPHYT_RS19785 and BPHYT_RS19790 are separated by 16 nucleotidesBPHYT_RS19790 and BPHYT_RS19795 overlap by 4 nucleotidesBPHYT_RS19795 and BPHYT_RS19800 overlap by 8 nucleotides BPHYT_RS19780: BPHYT_RS19780 - diguanylate cyclase, at 4,450,119 to 4,451,207 _RS19780 BPHYT_RS19785: BPHYT_RS19785 - chemotaxis protein CheY, at 4,451,268 to 4,452,284 _RS19785 BPHYT_RS19790: BPHYT_RS19790 - peptidase M23, at 4,452,301 to 4,454,715 _RS19790 BPHYT_RS19795: BPHYT_RS19795 - chemotaxis protein CheW, at 4,454,712 to 4,455,392 _RS19795 BPHYT_RS19800: BPHYT_RS19800 - chemotaxis protein CheR, at 4,455,385 to 4,456,815 _RS19800
Group Condition BPHYT_RS19780 BPHYT_RS19785 BPHYT_RS19790 BPHYT_RS19795 BPHYT_RS19800
carbon source D-Xylose (C) -0.0 -4.5 -0.1 -0.1 -0.1
carbon source Xylitol (C) +0.3 -4.5 +0.0 +0.0 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -4.3 -0.2 +0.1 -0.1
carbon source Tween 20 (C) +0.4 -4.3 +0.0 -0.2 -0.1
nitrogen source L-Lysine (N) -0.6 -3.0 +0.1 -0.4 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -3.4 -0.1 -0.5 -0.0
nitrogen source Carnitine Hydrochloride (N) -0.1 -2.8 -0.2 -0.3 -0.2
carbon source L-Fucose (C) +0.1 -3.4 -0.1 +0.1 -0.1
carbon source D-Sorbitol (C) +0.1 -2.7 -0.0 -0.1 -0.0
phage 36hr PHYTO6 MOI 0.1 +0.2 -2.3 +0.0 -0.1 -0.4
nitrogen source Uridine (N) -0.0 -2.4 +0.0 -0.2 -0.1
nitrogen source L-Glutamic (N) +0.0 -2.5 -0.1 +0.2 -0.2
carbon source m-Inositol (C) -0.1 -2.2 -0.1 -0.2 -0.0
carbon source D-Fructose (C) +0.0 -2.4 +0.1 +0.1 +0.0
carbon source D-Glucose 20 mM (C) -0.1 -1.4 -0.2 -0.2 -0.4
phage 24hr PHYTO11 MOI 0.1 +0.2 -2.0 +0.0 +0.2 -0.4
phage 24hr PHYTO2 MOI 1 -0.0 -1.8 -0.1 +0.2 -0.2
nophagecontrol 24hr Phyto Lib Only +0.3 -1.7 -0.2 +0.0 -0.2
phage 24hr PHYTO9 MOI 10 -0.2 -1.3 -0.2 +0.3 -0.4
nophagecontrol 36hr Phyto Lib only +0.1 -1.5 -0.2 +0.2 -0.2
carbon source D-Glucose (C) +0.2 -1.4 -0.2 -0.3 +0.1
vitamin No vitamins t2 -0.1 -1.7 +0.1 +0.2 +0.1
carbon source L-Rhamnose (C) +0.2 -1.7 +0.1 +0.1 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.1 -1.6 +0.1 +0.3 +0.1
supernatant control Vogels_fungal_media 0.1X +0.5 +1.0 +0.3 -0.1 +0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.9 +1.2 +0.5 -0.0 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.0 +1.1 +0.3 +0.2 -0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.1 +0.7 +0.4 +0.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.7 +0.2 +0.3 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.5 +0.4 +0.4 +0.1
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