Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19745 and BPHYT_RS19750 are separated by 105 nucleotidesBPHYT_RS19750 and BPHYT_RS19755 are separated by 241 nucleotidesBPHYT_RS19755 and BPHYT_RS19760 are separated by 68 nucleotidesBPHYT_RS19760 and BPHYT_RS19765 are separated by 181 nucleotides BPHYT_RS19745: BPHYT_RS19745 - membrane protein, at 4,443,369 to 4,443,548 _RS19745 BPHYT_RS19750: BPHYT_RS19750 - hypothetical protein, at 4,443,654 to 4,443,851 _RS19750 BPHYT_RS19755: BPHYT_RS19755 - HIT family hydrolase, at 4,444,093 to 4,444,518 _RS19755 BPHYT_RS19760: BPHYT_RS19760 - AraC family transcriptional regulator, at 4,444,587 to 4,445,528 _RS19760 BPHYT_RS19765: BPHYT_RS19765 - AraC family transcriptional regulator, at 4,445,710 to 4,446,522 _RS19765
Group Condition BPHYT_RS19745 BPHYT_RS19750 BPHYT_RS19755 BPHYT_RS19760 BPHYT_RS19765
phage 36hr PHYTO11 MOI 0.1 N.D. N.D. N.D. -1.1 -0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -1.0 -0.3
nitrogen source D-Alanine (N) N.D. N.D. N.D. -0.9 -0.4
phage 36hr PHYTO9 MOI 1 N.D. N.D. N.D. -0.9 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -1.0 -0.1
temperature LB, 37C N.D. N.D. N.D. -0.8 -0.2
carbon source Phenylacetic 5 mM (C) N.D. N.D. N.D. -1.1 +0.0
nitrogen source L-Proline (N) N.D. N.D. N.D. -0.7 -0.3
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. -0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.5 -0.5
phage 24hr PHYTO4 MOI 0.1 N.D. N.D. N.D. -0.9 -0.1
phage 24hr PHYTO1 MOI 1 N.D. N.D. N.D. -1.0 +0.1
stress Nickel (II) chloride 1 mM N.D. N.D. N.D. -1.0 +0.1
carbon source D-Glucose (C) N.D. N.D. N.D. -0.9 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.8 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. N.D. +0.6 -0.5
vitamin With vitamins t1 N.D. N.D. N.D. +0.7 -0.4
phage 24hr PHYTO6 MOI 10 N.D. N.D. N.D. +0.7 -0.3
phage 36hr PHYTO1 MOI 10 N.D. N.D. N.D. +0.9 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. +0.8 -0.2
carbon source Phenylacetic 5 mM (C) N.D. N.D. N.D. +0.8 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +0.8 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.5 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.6 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.7 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. +0.6 +0.5
phage 24hr PHYTO7 MOI 10 N.D. N.D. N.D. +0.9 +0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. N.D. +0.8 +0.5
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