Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19720	BPHYT_RS19725	BPHYT_RS19730	BPHYT_RS19735	BPHYT_RS19740
carbon source	L-Arabinose (C)	-2.4	-2.2	-2.8	-0.5	-0.2
nitrogen source	L-Lysine (N)	-0.4	-0.3	-0.3	-1.7	-0.0
carbon source	L-Fucose (C)	-0.7	-0.3	-1.3	-0.2	-0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.5	-0.7	+0.0	-1.9	-0.0
temperature	LB, 23C	-0.1	-0.4	-0.1	-1.0	-0.3
carbon source	D-Glucose 20 mM (C)	+0.3	-0.6	+0.0	-1.2	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	+0.2	-0.3	-1.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.1	-0.1	-1.2	+0.5
carbon source	Phenylacetic 5 mM (C)	+0.2	-0.5	+0.1	-0.9	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	-1.3	+0.4	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.4	-0.7	-0.7	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	+0.1	+0.5	-1.4	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.7	-0.2	-1.0	+0.2
motility	inner cut, LB soft agar motility assay	-0.1	-0.5	-0.2	+1.1	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.0	-0.5	-0.1	+1.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-0.3	+0.4	+1.1	+0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.9	-0.1	+0.7	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.5	+0.1	-0.4	+1.0	+0.1
carbon source	adipate (C)	-0.4	+0.5	-0.1	+1.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.3	+0.1	+1.0	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.0	-0.1	+0.1	+1.7	-0.2
phage	PHYTO3 MOI 0.1	-0.1	+0.7	-0.2	+0.7	+0.3
carbon source	Azelaic (C)	-0.2	+0.5	+0.0	+1.0	+0.2
carbon source	Suberic (C)	+0.1	+0.4	-0.2	+1.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+1.1	+0.0	+0.6	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	-0.9	+0.0	+2.7	+0.0
carbon source	propionate (C)	-0.0	+0.4	-0.2	+1.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.6	+0.0	+1.5	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.0	+1.0	+0.1	+1.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.2	-0.2	+3.2	-0.1