Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS19630	BPHYT_RS19635	BPHYT_RS19640	BPHYT_RS19645	BPHYT_RS19650
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-1.0	-1.2	-1.8	N.D.	-1.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.9	-0.8	-1.3	N.D.	-0.9
carbon source	Trisodium citrate (C)	-0.8	-0.6	-0.5	N.D.	-0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.6	-0.1	-0.4	N.D.	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	-0.4	-0.8	N.D.	-0.5
supernatant control	Vogels_fungal_media; pH 5.5	-0.5	-0.6	-0.4	N.D.	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.0	+0.1	N.D.	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.4	-0.4	-0.6	N.D.	-0.2
carbon source	D-Xylose (C)	-0.5	-0.2	-0.4	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.3	-0.3	N.D.	-0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.1	-0.3	N.D.	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-0.4	-0.3	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.4	-0.3	-0.4	N.D.	-0.3
carbon source	D-Glucose (C)	-0.4	-0.1	-0.2	N.D.	-0.6
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.0	-0.2	N.D.	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.1	-0.4	-0.9	N.D.	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.3	+0.1	N.D.	-0.3
carbon source	2-Deoxy-D-Ribose (C)	-0.5	+0.1	+0.1	N.D.	-0.6
carbon source	D-Glucose (C)	-0.5	+0.1	-0.6	N.D.	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.0	+0.2	N.D.	-0.6
phage	P. phyto corn MOI 1	-0.5	+0.2	+0.1	N.D.	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	-0.0	-0.1	N.D.	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.2	+0.4	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.1	+0.6	N.D.	-0.3
phage	24hr PHYTO3 MOI 10	-0.5	+0.2	+0.2	N.D.	+0.4
nitrogen source	Carnitine Hydrochloride (N)	+0.1	+0.4	+0.2	N.D.	+0.6
carbon source	Tween 20 (C)	+0.4	+0.5	-0.0	N.D.	+0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.2	+0.3	+0.4	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.6	+0.4	N.D.	+0.8
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.5	+1.0	+0.8	N.D.	+0.8