Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19530	BPHYT_RS19535	BPHYT_RS19540	BPHYT_RS19545	BPHYT_RS19550
carbon source	Gly-Glu (C)	-0.3	-3.0	-2.1	-0.3	-0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.5	-1.3	-1.2	-1.1	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.5	-1.2	-1.1	-1.1	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.1	-1.6	-1.0	-1.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.5	-1.3	-1.3	-0.2	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	-1.0	-0.7	-0.9	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.9	-1.0	-0.6	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	-0.9	-0.4	-1.1	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	-0.9	-0.8	-1.0	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.1	-1.1	-0.7	-0.4	-0.2
pH	LB, pH4	+0.1	-1.2	-1.1	-0.6	+0.3
pH	LB, pH4	-0.2	-1.4	-1.0	-0.1	+0.1
phage	36hr PHYTO1 MOI 10	-0.1	+0.1	-0.3	-1.7	-0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.7	+0.1	+0.2	-1.9	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.1	-0.4	-0.2	-1.6	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.1	-1.1	-0.2	-0.9	+0.2
phage	36hr PHYTO8 MOI 0.1	+0.1	+0.2	-0.3	-1.6	-0.5
phage	36hr PHYTO11 MOI 0.1	-0.2	+0.2	-0.3	-1.7	+0.0
phage	24hr PHYTO6 MOI 0.1	-0.3	+0.1	+0.1	-1.7	-0.2
carbon source	D-Glucose (C)	-0.8	+0.4	-0.1	-1.1	-0.2
phage	36hr PHYTO2 MOI 1	+0.0	+0.4	-0.2	-1.9	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.3	-0.7	-0.3	-1.3	+0.2
nophagecontrol	36hr Phyto Lib only	-0.2	+0.3	-0.1	-1.6	-0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.3	+0.3	-0.0	-1.8	+0.2
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.6	-0.1	+0.1	-1.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.5	-0.5	-0.9	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.7	-0.5	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.8	+0.2	-1.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.1	-0.1	-0.6	+1.2
carbon source	L-Arginine (C)	+0.3	+0.7	+0.2	-0.9	+0.2