Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19510	BPHYT_RS19515	BPHYT_RS19520	BPHYT_RS19525	BPHYT_RS19530
phage	36hr PHYTO7 MOI 1	-0.1	-0.8	+0.1	N.D.	-0.4
phage	PHYTO3 MOI 0.1	-0.1	-0.9	+0.1	N.D.	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	-0.7	+0.1	N.D.	-0.0
supernatant control	Vogels_fungal_media 0.1X	-0.2	+0.2	-0.4	N.D.	-0.6
nitrogen source	L-Phenylalanine (N)	-0.4	-0.3	-0.4	N.D.	+0.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.3	+0.1	-0.3	N.D.	-0.5
phage	P. phyto PHYTO2 MOI 1	-0.3	-0.7	-0.0	N.D.	+0.1
carbon source	Malonic (C)	+0.2	-0.5	-0.0	N.D.	-0.6
carbon source	D-Glucose (C)	+0.2	-0.3	+0.1	N.D.	-0.8
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.5	+0.3	N.D.	-0.4
carbon source	L-Fucose (C)	-0.1	-0.6	-0.3	N.D.	+0.2
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.2	-0.5	+0.1	N.D.	-0.6
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.2	-0.3	+0.4	N.D.	-0.7
phage	24hr PHYTO4 MOI 10	-0.3	-0.7	+0.3	N.D.	+0.3
carbon source	Tween 20 (C)	-0.3	+0.4	+0.0	N.D.	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.0	-0.2	-0.4	N.D.	+0.5
temperature	LB, 37C	-0.3	-0.4	+0.0	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.5	-0.3	N.D.	+0.2
phage	24hr PHYTO6 MOI 10	+0.1	-0.6	+0.2	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.7	+0.1	N.D.	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.2	+0.3	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.4	+0.2	N.D.	+0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.1	+0.4	-0.4	N.D.	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.4	-0.1	+0.2	N.D.	+0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.3	+0.3	N.D.	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.5	+0.7	N.D.	+0.5
phage	36hr PHYTO3 MOI 1	-0.0	+0.1	+0.3	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.9	+0.3	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+1.0	+0.3	N.D.	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.4	+0.5	-0.0	N.D.	+0.6