Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19490	BPHYT_RS19495	BPHYT_RS19500	BPHYT_RS19505	BPHYT_RS19510
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-0.6	-0.3	-0.4	-0.2
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.5	-0.3	-0.6	-0.4	-0.2
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.2	-0.4	-0.7	-0.3	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.6	-0.1	-0.2	-0.4	-0.3
nitrogen source	L-Alanine (N)	-0.5	-0.0	-0.4	-0.6	-0.1
carbon source	D-Glucose 20 mM (C)	-0.6	-0.3	-0.0	-0.4	-0.3
nitrogen source	L-Lysine (N)	+0.0	-0.3	-0.5	-0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.1	-0.6	-0.1	-0.2
nitrogen source	L-Serine (N)	+0.2	-0.6	-0.3	-0.5	-0.2
phage	24hr PHYTO9 MOI 10	-0.4	-0.3	+0.1	-0.6	-0.2
carbon source	Phenylacetic 5 mM (C)	-1.2	-0.2	+0.3	+0.0	-0.2
carbon source	Phenylacetic 5 mM (C)	-0.9	+0.1	-0.2	-0.2	-0.1
nophagecontrol	36hr Phyto Lib only	-0.6	-0.2	-0.4	+0.2	+0.1
phage	36hr PHYTO8 MOI 10	-0.9	-0.3	+0.2	+0.1	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.4	+0.2	+0.5	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.9	-0.1	-0.7	-0.1	-0.4
temperature	LB, 37C	-0.5	-0.1	+0.5	+0.1	-0.3
motility	outer cut, LB soft agar motility assay	-0.1	+0.0	-0.8	+0.6	-0.1
phage	36hr PHYTO6 MOI 0.1	-0.8	-0.1	+0.3	+0.4	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.0	-0.6	-0.2	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.2	-0.4	-0.3	+0.0
phage	36hr PHYTO10 MOI 1	-0.6	+0.1	+0.6	+0.4	+0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.2	-0.4	-0.2	+0.1
carbon source	Xylitol (C)	+0.6	+0.1	-0.5	+0.4	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.1	-0.3	+0.0	+0.4
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.9	-0.3	-0.2	+0.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.9	-0.4	-0.2	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.5	+0.2	-0.2	+0.3
phage	24hr PHYTO3 MOI 10	-0.0	+0.5	+0.4	+0.8	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4	-0.0	-0.0	-0.1	+0.5