Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS19485 and BPHYT_RS19490 overlap by 4 nucleotidesBPHYT_RS19490 and BPHYT_RS19495 are separated by 298 nucleotidesBPHYT_RS19495 and BPHYT_RS19500 are separated by 138 nucleotidesBPHYT_RS19500 and BPHYT_RS19505 are separated by 145 nucleotides BPHYT_RS19485: BPHYT_RS19485 - histidinol dehydrogenase, at 4,384,848 to 4,385,606 _RS19485 BPHYT_RS19490: BPHYT_RS19490 - amino acid ABC transporter ATP-binding protein, at 4,385,603 to 4,386,382 _RS19490 BPHYT_RS19495: BPHYT_RS19495 - choline dehydrogenase, at 4,386,681 to 4,388,393 _RS19495 BPHYT_RS19500: BPHYT_RS19500 - methylmalonate-semialdehyde dehydrogenase, at 4,388,532 to 4,390,070 _RS19500 BPHYT_RS19505: BPHYT_RS19505 - LysR family transcriptional regulator, at 4,390,216 to 4,391,115 _RS19505
Group Condition BPHYT_RS19485 BPHYT_RS19490 BPHYT_RS19495 BPHYT_RS19500 BPHYT_RS19505
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.7 -0.6 -0.3 -0.4
phage 24hr PHYTO9 MOI 10 -0.5 -0.4 -0.3 +0.1 -0.6
nitrogen source L-Serine (N) -0.3 +0.2 -0.6 -0.3 -0.5
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 +0.3 -0.5 -0.3 -0.6 -0.4
nitrogen source L-Alanine (N) +0.1 -0.5 -0.0 -0.4 -0.6
phage 36hr PHYTO8 MOI 10 -0.3 -0.9 -0.3 +0.2 +0.1
carbon source Phenylacetic 5 mM (C) -0.1 -1.2 -0.2 +0.3 +0.0
phage 36hr PHYTO11 MOI 1 -0.4 -0.8 -0.2 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.7 +0.1 -0.6 -0.1
motility outer cut, LB soft agar motility assay -0.3 -0.1 +0.0 -0.8 +0.6
phage 36hr PHYTO6 MOI 1 -0.5 -0.5 +0.1 +0.5 -0.1
phage 24hr PHYTO10 MOI 10 -0.7 -0.4 +0.1 +0.4 +0.2
phage 36hr PHYTO6 MOI 0.1 -0.2 -0.8 -0.1 +0.3 +0.4
phage PHYTO3 MOI 0.1 -0.4 +0.3 -0.4 +0.4 -0.2
phage 36hr PHYTO4 MOI 1 -0.4 -0.2 +0.3 +0.4 -0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.7 +0.2 -0.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 +0.9 -0.1 -0.7 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.6 +0.0 -0.6 -0.2
phage 36hr PHYTO10 MOI 1 -0.2 -0.6 +0.1 +0.6 +0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.8 +0.2 -0.4 -0.2
carbon source Xylitol (C) -0.3 +0.6 +0.1 -0.5 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 -0.2 +0.1 -0.3 +0.3
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.5 +0.9 -0.4 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 -0.5 +0.3 -0.1 +0.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.8 -0.4 -0.1 +0.2
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.4 +0.9 -0.3 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.2 +0.3 +0.5 -0.2
phage 24hr PHYTO3 MOI 10 -0.6 -0.0 +0.5 +0.4 +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +1.4 -0.0 -0.0 -0.1
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.5 -0.0 +0.5 +0.2
remove
BPHYT_RS19485
plot		 remove
BPHYT_RS19490
plot		 remove
BPHYT_RS19495		 remove
BPHYT_RS19500
plot		 remove
BPHYT_RS19505
plot