Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19465 and BPHYT_RS19470 are separated by 518 nucleotidesBPHYT_RS19470 and BPHYT_RS19475 overlap by 1 nucleotidesBPHYT_RS19475 and BPHYT_RS19480 are separated by 188 nucleotidesBPHYT_RS19480 and BPHYT_RS19485 are separated by 51 nucleotides BPHYT_RS19465: BPHYT_RS19465 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,379,853 to 4,381,019 _RS19465 BPHYT_RS19470: BPHYT_RS19470 - ABC transporter permease, at 4,381,538 to 4,382,509 _RS19470 BPHYT_RS19475: BPHYT_RS19475 - ABC transporter permease, at 4,382,509 to 4,383,393 _RS19475 BPHYT_RS19480: BPHYT_RS19480 - ABC transporter permease, at 4,383,582 to 4,384,796 _RS19480 BPHYT_RS19485: BPHYT_RS19485 - histidinol dehydrogenase, at 4,384,848 to 4,385,606 _RS19485
Group Condition BPHYT_RS19465 BPHYT_RS19470 BPHYT_RS19475 BPHYT_RS19480 BPHYT_RS19485
phage 36hr PHYTO11 MOI 1 -0.2 -0.2 -0.3 -0.4 -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 -0.5 -0.6 -0.2 -0.1
phage 36hr PHYTO1 MOI 10 -0.2 -0.2 -0.7 -0.1 -0.3
phage 24hr PHYTO3 MOI 10 -0.2 -0.0 -0.7 -0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 -0.2 -0.9 -0.2 -0.2
phage 36hr PHYTO9 MOI 0.1 +0.0 -0.1 -0.3 -0.2 -0.8
nophagecontrol 36hr Phyto Lib Only -0.2 +0.1 -0.6 -0.3 -0.4
phage 24hr PHYTO4 MOI 0.1 -0.1 +0.0 -0.7 -0.1 -0.4
phage 24hr PHYTO11 MOI 0.1 +0.0 -0.1 -0.8 -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -0.6 -0.3 -0.1 -0.3
carbon source Phenylacetic 5 mM (C) -0.4 +0.1 -0.6 -0.3 -0.1
carbon source Disodium Glutarate (C) +0.1 -0.5 +0.2 -0.3 -0.8
phage 36hr PHYTO10 MOI 10 +0.2 -0.3 -0.4 -0.1 -0.6
phage 36hr PHYTO10 MOI 10 -0.1 +0.2 -0.4 -0.3 -0.6
temperature LB, 37C +0.1 -0.1 -0.8 -0.2 -0.2
phage 24hr PHYTO9 MOI 10 -0.5 -0.3 +0.2 -0.0 -0.5
phage 36hr PHYTO6 MOI 1 -0.2 +0.2 -0.3 -0.3 -0.5
phage 36hr PHYTO8 MOI 0.1 +0.0 +0.3 -0.4 -0.3 -0.7
phage 24hr PHYTO2 MOI 1 -0.1 +0.3 -0.6 -0.2 -0.5
nitrogen source L-Serine (N) -0.3 -0.3 +0.3 -0.1 -0.3
phage 24hr PHYTO10 MOI 10 -0.3 +0.0 +0.2 -0.2 -0.7
motility inner cut, LB soft agar motility assay +0.6 -0.1 -0.4 -0.1 -0.4
carbon source Sebacic (C) -0.2 -0.2 +0.6 -0.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.0 -0.4 -0.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +0.1 +0.2 +0.1 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.1 -0.0 +0.1 +1.0
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.0 +1.0 -0.1 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.0 +0.4 +0.8 +0.2 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.0 +0.6 +0.4 +0.3 +0.3
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.1 +1.0 +0.1 +0.6
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BPHYT_RS19465
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BPHYT_RS19470
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BPHYT_RS19485
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