Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19455	BPHYT_RS19460	BPHYT_RS19465	BPHYT_RS19470	BPHYT_RS19475
carbon source	L-Phenylalanine (C)	-0.4	-0.3	-0.5	-0.2	-0.2
nitrogen source	L-Lysine (N)	-0.2	-0.2	-0.3	-0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.5	-0.3	-0.0	-0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.0	-0.1	-0.2	-0.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.6	-0.4	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.5	-0.4	-0.1	-0.1
phage	36hr PHYTO1 MOI 10	-0.1	-0.1	-0.2	-0.2	-0.7
temperature	LB, 23C	-0.2	-0.3	-0.0	-0.3	-0.4
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.2	-0.3	-0.3	+0.0	-0.4
carbon source	D-Glucose (C)	-0.3	-0.3	-0.3	-0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.1	-0.2	-0.3	-0.6
temperature	LB, 37C	-0.1	-0.3	+0.1	-0.1	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.1	+0.0	-0.2	-0.9
phage	P. phyto PHYTO2 MOI 1	-0.3	-0.2	-0.2	-0.4	+0.2
nitrogen source	L-Glutamic (N)	-0.2	-0.5	-0.0	-0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.2	-0.5	+0.0	-0.4
phage	24hr PHYTO2 MOI 1	-0.2	-0.3	-0.1	+0.3	-0.6
phage	36hr PHYTO10 MOI 10	+0.1	-0.3	+0.2	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.2	-0.0	-0.3	+0.2
phage	24hr PHYTO9 MOI 10	+0.2	-0.2	-0.5	-0.3	+0.2
nitrogen source	L-Serine (N)	-0.1	-0.1	-0.3	-0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+0.3	-0.1	-0.5	-0.2
motility	inner cut, LB soft agar motility assay	-0.1	-0.3	+0.6	-0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.1	-0.1	-0.3	+0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	+0.1	+0.3	+0.2	+0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.0	-0.0	+0.0	+1.0
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	-0.0	+0.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.1	+0.0	+0.0	+0.6	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.1	+0.0	-0.0	+0.4	+0.8
carbon source	D-Glucose (C)	-0.2	+0.3	+0.0	+0.0	+0.9