Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS19445	BPHYT_RS19450	BPHYT_RS19455	BPHYT_RS19460	BPHYT_RS19465
carbon source	L-Phenylalanine (C)	-0.4	-0.6	-0.4	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.1	-0.3	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.1	-0.2	-0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.0	-0.1	-0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.1	-0.1	-0.5	-0.3
carbon source	D-Glucose (C)	-0.1	-0.2	-0.3	-0.3	-0.3
carbon source	D-Glucose (C)	-0.1	-0.2	-0.4	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.0	+0.0	-0.4	-0.4
phage	P. phyto PHYTO2 MOI 1	-0.2	-0.2	-0.3	-0.2	-0.2
carbon source	Phenylacetic 5 mM (C)	-0.4	-0.2	-0.0	+0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.2	-0.1	-0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.0	+0.0	-0.4	-0.3
nitrogen source	NAG (N)	-0.2	-0.1	-0.1	-0.3	-0.2
supernatant control	Vogels_fungal_media; pH 5.5	-0.4	+0.0	-0.2	-0.3	-0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.1	+0.1	-0.2	-0.3	-0.3
carbon source	D-Xylose (C)	-0.2	-0.1	-0.2	-0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.1	-0.2	-0.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	-0.2	+0.0	-0.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	-0.2	-0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.1	-0.3	+0.2	-0.5
phage	24hr PHYTO9 MOI 10	+0.0	+0.1	+0.2	-0.2	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.1	-0.1	-0.4	+0.1	+0.3
phage	36hr PHYTO4 MOI 1	+0.2	+0.4	-0.0	-0.5	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.2	+0.1	-0.4	-0.1
phage	36hr PHYTO3 MOI 0.1	+0.4	+0.3	-0.2	-0.0	-0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.4	+0.2	-0.3	-0.0	+0.1
motility	inner cut, LB soft agar motility assay	+0.0	+0.2	-0.1	-0.3	+0.6
phage	36hr PHYTO6 MOI 1	+0.2	+0.2	-0.0	+0.3	-0.2
phage	24hr PHYTO6 MOI 10	+0.3	+0.1	+0.2	+0.2	-0.2
phage	36hr PHYTO11 MOI 0.1	+0.1	+0.3	+0.3	+0.3	-0.2