Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19350 and BPHYT_RS19355 are separated by 88 nucleotidesBPHYT_RS19355 and BPHYT_RS19360 are separated by 736 nucleotidesBPHYT_RS19360 and BPHYT_RS19365 are separated by 474 nucleotidesBPHYT_RS19365 and BPHYT_RS19370 are separated by 218 nucleotides BPHYT_RS19350: BPHYT_RS19350 - amino acid ABC transporter substrate-binding protein, at 4,347,659 to 4,348,807 _RS19350 BPHYT_RS19355: BPHYT_RS19355 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 4,348,896 to 4,352,825 _RS19355 BPHYT_RS19360: BPHYT_RS19360 - primosome assembly protein PriA, at 4,353,562 to 4,355,799 _RS19360 BPHYT_RS19365: BPHYT_RS19365 - uroporphyrinogen decarboxylase, at 4,356,274 to 4,357,374 _RS19365 BPHYT_RS19370: BPHYT_RS19370 - arogenate dehydratase, at 4,357,593 to 4,358,390 _RS19370
Group Condition BPHYT_RS19350 BPHYT_RS19355 BPHYT_RS19360 BPHYT_RS19365 BPHYT_RS19370
carbon source L-Proline (C) -0.3 -5.5 N.D. N.D. -0.1
nitrogen source L-Proline (N) -0.5 -4.8 N.D. N.D. -0.2
stress Benzethonium chloride 0.0016 mM -1.6 -1.5 N.D. N.D. -0.0
nitrogen source L-Citrulline (N) -0.3 -1.4 N.D. N.D. -0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.3 -0.7 N.D. N.D. -0.3
carbon source Putrescine (C) -0.0 -0.7 N.D. N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.7 N.D. N.D. +0.1
phage 36hr PHYTO10 MOI 10 -0.5 +0.1 N.D. N.D. -0.4
nutrient L-Serine +0.2 -1.0 N.D. N.D. +0.1
phage 24hr PHYTO4 MOI 10 -0.3 +0.2 N.D. N.D. -0.6
nitrogen source L-Lysine (N) +0.3 -0.6 N.D. N.D. -0.2
phage 36hr PHYTO2 MOI 1 -0.5 +0.3 N.D. N.D. -0.3
phage 36hr PHYTO10 MOI 10 -0.1 +0.2 N.D. N.D. -0.6
nutrient L-Serine +0.4 -0.9 N.D. N.D. +0.1
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.2 -0.5 N.D. N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.7 N.D. N.D. +0.3
carbon source L-Alanine (C) -0.0 +1.0 N.D. N.D. -0.1
carbon source D-Alanine (C) +0.1 +1.1 N.D. N.D. -0.3
nitrogen source L-Glutamic (N) +0.0 +1.1 N.D. N.D. -0.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +0.4 N.D. N.D. -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +1.0 +0.7 N.D. N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.9 +0.8 N.D. N.D. -0.1
carbon source L-Asparagine (C) +0.3 +1.7 N.D. N.D. -0.2
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 +0.6 N.D. N.D. -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.4 +0.8 N.D. N.D. -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.8 +1.3 N.D. N.D. -0.1
carbon source L-Glutamine (C) -0.0 +3.5 N.D. N.D. -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +2.0 +1.4 N.D. N.D. -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +3.8 +2.7 N.D. N.D. +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +4.1 +3.1 N.D. N.D. -0.0
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