Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS19220	BPHYT_RS19225	BPHYT_RS19230	BPHYT_RS19235	BPHYT_RS19240
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.6	-0.8	-0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.6	-0.5	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.6	-0.4	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.4	-0.6	-0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.5	-0.4	-0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.4	-0.5	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.2	-0.3	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.4	-0.5	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.2	-0.3	-0.6	-0.3
nitrogen source	NAG (N)	-0.2	-0.2	-0.2	-0.5	-0.4
carbon source	D-Glucose (C)	-0.2	-0.3	-0.4	-0.4	-0.1
carbon source	L-Fucose (C)	-0.0	-0.0	-0.3	-0.9	-0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.0	-0.6	-0.3	+0.1	-0.3
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.2	-0.1	-0.3	-0.7	+0.2
phage	24hr PHYTO4 MOI 0.1	+0.1	+0.3	-0.4	-0.8	-0.1
phage	24hr PHYTO3 MOI 10	-0.1	-0.3	-0.2	-0.4	+0.3
carbon source	Suberic (C)	-0.0	+0.0	-0.4	+0.6	-0.3
motility	outer cut, LB soft agar motility assay	+0.2	+0.2	+0.3	-0.5	+0.2
carbon source	Sebacic (C)	+0.0	-0.3	-0.1	+0.7	+0.2
carbon source	Malonic (C)	+0.0	-0.1	-0.4	+0.9	+0.2
carbon source	Phenylacetic 5 mM (C)	+0.1	+0.5	+0.2	-0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.3	+0.5	-0.3	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	+0.4	-0.0	-0.2	+0.3
carbon source	Protocatechuic Acid (C)	-0.1	+0.1	+0.2	+0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+0.5	+0.4	-0.4	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	+0.3	+0.5	+0.2	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.1	+0.9	+0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	+0.5	+0.5	+0.3	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	+0.5	+0.4	+0.4	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.4	+0.7	+0.1	+1.0	+0.2