Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19210	BPHYT_RS19215	BPHYT_RS19220	BPHYT_RS19225	BPHYT_RS19230
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.6	-0.6	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.6	-0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.5	-0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.4	-0.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.4	-0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.4	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.3	-0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.4	-0.2	-0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	N.D.	+0.0	-0.6	-0.3
carbon source	D-Glucose (C)	N.D.	N.D.	-0.2	-0.3	-0.4
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	N.D.	N.D.	-0.2	-0.3	-0.3
carbon source	Tween 20 (C)	N.D.	N.D.	+0.3	-0.6	-0.0
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	-0.4	-0.1
phage	24hr PHYTO4 MOI 0.1	N.D.	N.D.	+0.1	+0.3	-0.4
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	N.D.	+0.0	+0.4	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.3	+0.4	-0.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	+0.2	+0.4	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.3	+0.3	+0.2
motility	outer cut, LB soft agar motility assay	N.D.	N.D.	+0.2	+0.2	+0.4
supernatant control	Vogels_fungal_media 0.1X	N.D.	N.D.	+0.4	+0.4	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.0	+0.3	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	+0.1	+0.5	+0.3
carbon source	Phenylacetic 5 mM (C)	N.D.	N.D.	+0.1	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.0	+0.5	+0.4
supernatant control	Vogels_fungal_media 0.1X	N.D.	N.D.	+0.2	+0.1	+0.6
motility	outer cut, LB soft agar motility assay	N.D.	N.D.	+0.1	+0.3	+0.5
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	N.D.	+0.3	+0.5	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.2	+0.5	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.3	+0.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.4	+0.7	+0.1