Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19175 and BPHYT_RS19180 are separated by 85 nucleotidesBPHYT_RS19180 and BPHYT_RS19185 are separated by 95 nucleotidesBPHYT_RS19185 and BPHYT_RS19190 are separated by 80 nucleotidesBPHYT_RS19190 and BPHYT_RS19195 are separated by 449 nucleotides BPHYT_RS19175: BPHYT_RS19175 - hypothetical protein, at 4,301,372 to 4,301,692 _RS19175 BPHYT_RS19180: BPHYT_RS19180 - XRE family transcriptional regulator, at 4,301,778 to 4,302,050 _RS19180 BPHYT_RS19185: BPHYT_RS19185 - ATPase, at 4,302,146 to 4,303,153 _RS19185 BPHYT_RS19190: BPHYT_RS19190 - peptidase S8, at 4,303,234 to 4,305,771 _RS19190 BPHYT_RS19195: BPHYT_RS19195 - hypothetical protein, at 4,306,221 to 4,309,976 _RS19195
Group Condition BPHYT_RS19175 BPHYT_RS19180 BPHYT_RS19185 BPHYT_RS19190 BPHYT_RS19195
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 N.D. -0.4 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 N.D. -0.2 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 N.D. -0.2 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 N.D. -0.2 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 N.D. -0.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 N.D. -0.2 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 N.D. -0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 N.D. -0.2 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 N.D. -0.2 -0.5
carbon source D-Glucose (C) N.D. -0.3 N.D. -0.2 -0.3
carbon source Malonic (C) N.D. -0.2 N.D. -0.3 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 N.D. +0.2 -1.3
carbon source Gly-Glu (C) N.D. -0.4 N.D. -0.1 -0.1
nitrogen source L-Isoleucine (N) N.D. -0.5 N.D. +0.1 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 N.D. +0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.3 N.D. +0.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.1 N.D. +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.2 N.D. +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.1 N.D. +0.3 -0.3
motility outer cut, LB soft agar motility assay N.D. -0.2 N.D. +0.2 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 N.D. +0.2 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.4 N.D. +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.1 N.D. +0.4 -0.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 N.D. +0.4 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.0 N.D. +0.3 +0.3
supernatant control Vogels_fungal_media 0.1X N.D. -0.0 N.D. +0.5 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. +0.5 N.D. +0.2 +0.0
supernatant control Vogels_fungal_media; pH 5.5 N.D. +0.2 N.D. +0.2 +0.3
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. +0.3 N.D. +0.3 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.2 N.D. +0.4 +0.4
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BPHYT_RS19175
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BPHYT_RS19180
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BPHYT_RS19195
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