Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19165 and BPHYT_RS19170 are separated by 366 nucleotidesBPHYT_RS19170 and BPHYT_RS19175 are separated by 871 nucleotidesBPHYT_RS19175 and BPHYT_RS19180 are separated by 85 nucleotidesBPHYT_RS19180 and BPHYT_RS19185 are separated by 95 nucleotides BPHYT_RS19165: BPHYT_RS19165 - sodium/hydrogen exchanger, at 4,298,602 to 4,299,612 _RS19165 BPHYT_RS19170: BPHYT_RS19170 - flagellar motor protein MotB, at 4,299,979 to 4,300,500 _RS19170 BPHYT_RS19175: BPHYT_RS19175 - hypothetical protein, at 4,301,372 to 4,301,692 _RS19175 BPHYT_RS19180: BPHYT_RS19180 - XRE family transcriptional regulator, at 4,301,778 to 4,302,050 _RS19180 BPHYT_RS19185: BPHYT_RS19185 - ATPase, at 4,302,146 to 4,303,153 _RS19185
Group Condition BPHYT_RS19165 BPHYT_RS19170 BPHYT_RS19175 BPHYT_RS19180 BPHYT_RS19185
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.6 N.D. -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.4 N.D. -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.3 N.D. -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.3 N.D. -0.4 N.D.
nitrogen source L-Isoleucine (N) -0.1 -0.1 N.D. -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.4 N.D. -0.3 N.D.
nitrogen source L-Lysine (N) -0.2 -0.2 N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 -0.3 N.D. -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.3 N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.3 N.D. -0.1 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.1 -0.4 N.D. -0.2 N.D.
phage 24hr PHYTO9 MOI 10 -0.1 -0.3 N.D. -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.3 N.D. -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.2 N.D. -0.4 N.D.
nitrogen source L-Serine (N) +0.1 +0.1 N.D. -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.2 +0.3 N.D. -0.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.2 -0.3 N.D. +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +0.2 N.D. -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.1 N.D. -0.3 N.D.
nitrogen source L-Glutamine (N) +0.2 +0.2 N.D. -0.3 N.D.
carbon source D-Glucose (C) -0.3 +0.3 N.D. +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.1 N.D. +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.2 N.D. -0.1 N.D.
motility inner cut, LB soft agar motility assay +0.3 +0.2 N.D. -0.1 N.D.
phage 24hr PHYTO6 MOI 10 -0.1 +0.4 N.D. +0.1 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.1 N.D. -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.2 N.D. +0.4 N.D.
supernatant control Vogels_fungal_media 0.1X +0.3 +0.3 N.D. -0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.2 N.D. +0.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.3 -0.2 N.D. +0.5 N.D.
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