Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS19110 and BPHYT_RS19115 are separated by 11 nucleotidesBPHYT_RS19115 and BPHYT_RS19120 are separated by 10 nucleotidesBPHYT_RS19120 and BPHYT_RS19125 overlap by 4 nucleotidesBPHYT_RS19125 and BPHYT_RS19130 overlap by 1 nucleotides BPHYT_RS19110: BPHYT_RS19110 - 3-oxoacyl-ACP synthase, at 4,289,174 to 4,290,214 _RS19110 BPHYT_RS19115: BPHYT_RS19115 - acyl carrier protein, at 4,290,226 to 4,290,453 _RS19115 BPHYT_RS19120: BPHYT_RS19120 - 3-oxoacyl-ACP synthase, at 4,290,464 to 4,291,528 _RS19120 BPHYT_RS19125: BPHYT_RS19125 - short-chain dehydrogenase, at 4,291,525 to 4,292,289 _RS19125 BPHYT_RS19130: BPHYT_RS19130 - acetyltransferase, at 4,292,289 to 4,292,921 _RS19130
Group Condition BPHYT_RS19110 BPHYT_RS19115 BPHYT_RS19120 BPHYT_RS19125 BPHYT_RS19130
motility outer cut, LB soft agar motility assay -1.7 -3.8 -3.3 -5.0 -4.6
motility outer cut, LB soft agar motility assay -1.8 -3.4 -3.5 -4.2 -5.2
motility inner cut, LB soft agar motility assay -1.3 -3.8 -2.6 -2.9 -1.7
motility inner cut, LB soft agar motility assay -1.5 -3.1 -2.1 -2.7 -2.5
motility outer cut, LB soft agar motility assay -1.3 -2.6 -2.4 -2.3 -2.1
motility inner cut, LB soft agar motility assay -0.8 -1.3 -2.2 -2.4 -1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.5 -1.6 -1.1 -0.8 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.4 -1.5 -1.0 -0.9 -1.4
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.9 -1.6 -0.6 -1.1 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.5 -1.0 -0.7 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.4 -1.5 -0.5 -0.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -1.2 -1.1 -1.0 -1.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.8 -1.4 -0.7 -0.1 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -2.6 -0.4 -0.1 -0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.3 -0.4 -0.4 -1.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -1.9 -0.6 -0.0 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.6 -0.2 -0.6 -1.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 -2.4 -0.2 +0.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -0.3 -1.4 -0.3 -0.7 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -0.7 -0.8 -0.8 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.9 -0.8 -1.1 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.2 -0.9 -0.7 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.4 -0.9 -0.9 -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 +0.3 -0.4 -0.9 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.5 -0.7 -0.6 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.3 -1.5 -1.1 -0.8
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.5 -1.3 -0.7 +0.5 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +1.0 -0.5 -0.7 -0.6
phage 24hr PHYTO3 MOI 10 +0.6 +0.7 +0.6 +0.6 +1.3
phage 24hr PHYTO3 MOI 10 +0.5 +0.7 +0.5 +1.1 +1.1
remove
BPHYT_RS19110
plot		 remove
BPHYT_RS19115
plot		 remove
BPHYT_RS19120		 remove
BPHYT_RS19125
plot		 remove
BPHYT_RS19130
plot