Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19095	BPHYT_RS19100	BPHYT_RS19105	BPHYT_RS19110	BPHYT_RS19115
motility	outer cut, LB soft agar motility assay	N.D.	-3.9	-4.2	-1.8	-3.4
motility	outer cut, LB soft agar motility assay	N.D.	-3.5	-3.4	-1.7	-3.8
motility	inner cut, LB soft agar motility assay	N.D.	-2.8	-2.9	-1.5	-3.1
motility	inner cut, LB soft agar motility assay	N.D.	-2.3	-2.5	-1.3	-3.8
motility	outer cut, LB soft agar motility assay	N.D.	-2.7	-2.3	-1.3	-2.6
motility	inner cut, LB soft agar motility assay	N.D.	-2.1	-1.9	-0.8	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	-0.7	-1.4	-1.4	-1.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	-1.3	-1.4	-1.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	-0.7	-1.2	-1.5	-1.6
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	-0.7	-0.7	-0.9	-1.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.5	-0.3	-2.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.5	-0.9	-0.6	-1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.8	-0.8	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.6	-0.5	-0.6	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	-0.1	+0.2	-2.6
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	N.D.	-0.4	-0.4	-0.3	-1.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	-0.4	-0.2	-1.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.0	-0.5	-0.3	-1.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.7	-0.4	-0.4	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.7	-0.6	-0.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.1	-0.3	-0.5	-1.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.2	-0.3	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.6	-0.4	-0.4	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	-0.7	-0.0	-0.7
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	-0.4	-0.5	+0.5	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-0.1	-0.5	+0.3	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.5	-0.4	-0.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.0	-0.2	-0.6	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.3	+0.7	+0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.4	-0.5	+0.1	+1.3