Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS19090 and BPHYT_RS19095 are separated by 3 nucleotidesBPHYT_RS19095 and BPHYT_RS19100 are separated by 263 nucleotidesBPHYT_RS19100 and BPHYT_RS19105 overlap by 4 nucleotidesBPHYT_RS19105 and BPHYT_RS19110 are separated by 2 nucleotides BPHYT_RS19090: BPHYT_RS19090 - flagellar hook protein FliD, at 4,283,546 to 4,285,063 _RS19090 BPHYT_RS19095: BPHYT_RS19095 - hypothetical protein, at 4,285,067 to 4,285,381 _RS19095 BPHYT_RS19100: BPHYT_RS19100 - hypothetical protein, at 4,285,645 to 4,288,017 _RS19100 BPHYT_RS19105: BPHYT_RS19105 - aminotransferase, at 4,288,014 to 4,289,171 _RS19105 BPHYT_RS19110: BPHYT_RS19110 - 3-oxoacyl-ACP synthase, at 4,289,174 to 4,290,214 _RS19110
Group Condition BPHYT_RS19090 BPHYT_RS19095 BPHYT_RS19100 BPHYT_RS19105 BPHYT_RS19110
motility outer cut, LB soft agar motility assay -0.6 N.D. -3.9 -4.2 -1.8
motility outer cut, LB soft agar motility assay -0.4 N.D. -3.5 -3.4 -1.7
motility inner cut, LB soft agar motility assay -0.9 N.D. -2.8 -2.9 -1.5
motility outer cut, LB soft agar motility assay -0.1 N.D. -2.7 -2.3 -1.3
motility inner cut, LB soft agar motility assay -0.3 N.D. -2.3 -2.5 -1.3
motility inner cut, LB soft agar motility assay -0.6 N.D. -2.1 -1.9 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.8 N.D. -0.7 -1.4 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.7 N.D. -0.7 -1.2 -1.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.1 N.D. -1.3 -1.4 -1.2
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.1 N.D. -0.7 -0.7 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -1.1 N.D. -0.4 -0.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. -0.5 -0.4 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 N.D. -0.4 -0.7 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. -0.3 -0.3 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.0 N.D. -0.4 -0.8 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -0.5 -0.9 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. -0.7 -0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 N.D. -0.6 -0.5 -0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -0.7 -0.4 -0.4
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. -0.4 -0.5 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -0.4 -0.5 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. -0.4 -0.5 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.4 N.D. -0.5 -0.5 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. -0.6 -0.4 -0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -0.2 -0.5 -0.5
phage 24hr PHYTO6 MOI 10 -0.2 N.D. -0.2 -0.7 +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.2 N.D. -0.4 -0.5 +0.5
phage 24hr PHYTO3 MOI 10 +0.4 N.D. -0.2 -0.4 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. +0.1 +0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 N.D. +0.3 +0.7 +0.2
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